miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16452 5' -56.9 NC_004084.1 + 2130 0.66 0.674895
Target:  5'- gUCCUCGAAguacacCUGGUgGUCGAcGUCGuACu -3'
miRNA:   3'- -AGGGGCUU------GACCGgCAGCUcUAGC-UG- -5'
16452 5' -56.9 NC_004084.1 + 18419 0.68 0.515407
Target:  5'- cUCCUCGAcgaGCUGGCUGaUGGGAUCu-- -3'
miRNA:   3'- -AGGGGCU---UGACCGGCaGCUCUAGcug -5'
16452 5' -56.9 NC_004084.1 + 43307 0.69 0.494028
Target:  5'- gCCCUGAG-UGGCUGUCuGGGAaguaacucagcgcUCGACg -3'
miRNA:   3'- aGGGGCUUgACCGGCAG-CUCU-------------AGCUG- -5'
16452 5' -56.9 NC_004084.1 + 21072 0.73 0.266624
Target:  5'- gCUUCGAGCUGGgcgUCGUCGGGAUCGcCg -3'
miRNA:   3'- aGGGGCUUGACC---GGCAGCUCUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 30326 0.67 0.610424
Target:  5'- aCCCCGAACcguUGaCCGUCGGcGAgguggcCGACg -3'
miRNA:   3'- aGGGGCUUG---ACcGGCAGCU-CUa-----GCUG- -5'
16452 5' -56.9 NC_004084.1 + 11033 0.67 0.610424
Target:  5'- cCCUgGAGCUcGCCGUCGA---CGACg -3'
miRNA:   3'- aGGGgCUUGAcCGGCAGCUcuaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 20835 0.67 0.599688
Target:  5'- cUCCCCGAGagugcCUcGGCuCGUCGAcgaguuGAUCGGu -3'
miRNA:   3'- -AGGGGCUU-----GA-CCG-GCAGCU------CUAGCUg -5'
16452 5' -56.9 NC_004084.1 + 5676 0.67 0.599688
Target:  5'- gUCCC-AGCggaGGUCGUCGAGGUCcGCu -3'
miRNA:   3'- aGGGGcUUGa--CCGGCAGCUCUAGcUG- -5'
16452 5' -56.9 NC_004084.1 + 8619 0.67 0.584706
Target:  5'- gUCCUCGAGgccgauCUGGCCGUCGAcuccguaaucgCGAUg -3'
miRNA:   3'- -AGGGGCUU------GACCGGCAGCUcua--------GCUG- -5'
16452 5' -56.9 NC_004084.1 + 35941 0.68 0.515407
Target:  5'- gUCCCCGGc---GUCGcCGGGGUCGGCg -3'
miRNA:   3'- -AGGGGCUugacCGGCaGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 13236 0.68 0.567674
Target:  5'- -gCCCGAucguugccguACUcaccGUCGUCGGGAUCGAUg -3'
miRNA:   3'- agGGGCU----------UGAc---CGGCAGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 6185 0.67 0.58898
Target:  5'- aCCUCGAGCUcgucucgaucgaGGCuCG-CGAGAcCGACg -3'
miRNA:   3'- aGGGGCUUGA------------CCG-GCaGCUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 56535 0.66 0.66419
Target:  5'- aUCCCCGAcuugGCgUGGCaGUCcagGAGG-CGACg -3'
miRNA:   3'- -AGGGGCU----UG-ACCGgCAG---CUCUaGCUG- -5'
16452 5' -56.9 NC_004084.1 + 29355 0.68 0.557093
Target:  5'- cCCCCGAGCgGGCgGUCGcggccugccagcAGAaCGAg -3'
miRNA:   3'- aGGGGCUUGaCCGgCAGC------------UCUaGCUg -5'
16452 5' -56.9 NC_004084.1 + 31671 0.66 0.653455
Target:  5'- cUCUCGA--UGGCCGUCGGGAaguUCG-Cu -3'
miRNA:   3'- aGGGGCUugACCGGCAGCUCU---AGCuG- -5'
16452 5' -56.9 NC_004084.1 + 52935 0.67 0.599688
Target:  5'- aCUgCGAcgauCUGGCCGUCGGcGUCGuCg -3'
miRNA:   3'- aGGgGCUu---GACCGGCAGCUcUAGCuG- -5'
16452 5' -56.9 NC_004084.1 + 12905 0.68 0.556038
Target:  5'- gUCCUCGGAgUGGCCGaccggccCGGccagguagacgcuGAUCGACg -3'
miRNA:   3'- -AGGGGCUUgACCGGCa------GCU-------------CUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 12473 0.69 0.495037
Target:  5'- aUCUCUGGACggggaggugUGGCCucagacaUCGGGAUCGACc -3'
miRNA:   3'- -AGGGGCUUG---------ACCGGc------AGCUCUAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 33227 0.66 0.631939
Target:  5'- --gCCGAGCgGGCCGUccccuaCGAGuUCGAUg -3'
miRNA:   3'- aggGGCUUGaCCGGCA------GCUCuAGCUG- -5'
16452 5' -56.9 NC_004084.1 + 42015 0.67 0.610424
Target:  5'- -gCUCGAG-UGGCCGUCGcgagcgaggcGGUCGACa -3'
miRNA:   3'- agGGGCUUgACCGGCAGCu---------CUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.