Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16453 | 3' | -54.3 | NC_004084.1 | + | 1516 | 0.67 | 0.73486 |
Target: 5'- gACGAGgaccUCuacaccgCUGUCGACGAUCCCu -3' miRNA: 3'- -UGCUCaacuAG-------GGCAGCUGCUAGGGc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 5655 | 0.66 | 0.814775 |
Target: 5'- gGCGAGcgGAUCCagaaagccacCGUCGACGAga-CGg -3' miRNA: 3'- -UGCUCaaCUAGG----------GCAGCUGCUaggGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 6221 | 0.72 | 0.451131 |
Target: 5'- gACGAGgucgaGAUUCCGgauagCGuCGAUCCCGa -3' miRNA: 3'- -UGCUCaa---CUAGGGCa----GCuGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 8055 | 0.68 | 0.704343 |
Target: 5'- cGCGGcGUUGAUCUCGaaGAUGucgCCCGg -3' miRNA: 3'- -UGCU-CAACUAGGGCagCUGCua-GGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 9053 | 0.66 | 0.823903 |
Target: 5'- aGCGGGUaGAgUCgggcgaCGUCGACGAUCaCCu -3' miRNA: 3'- -UGCUCAaCU-AGg-----GCAGCUGCUAG-GGc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 10040 | 0.7 | 0.596267 |
Target: 5'- uCGAGUcaccUCCGUUGACGAUCUCGa -3' miRNA: 3'- uGCUCAacuaGGGCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 12309 | 0.69 | 0.649431 |
Target: 5'- aGCGGGagaaacGGUCUcgaagaaCGUCGGCGAUCCUGa -3' miRNA: 3'- -UGCUCaa----CUAGG-------GCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 12837 | 0.68 | 0.71283 |
Target: 5'- aGCGGGUUGuugaacgcgaaCCCGUCGGCGuacUCCGc -3' miRNA: 3'- -UGCUCAACua---------GGGCAGCUGCua-GGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 14714 | 0.69 | 0.61794 |
Target: 5'- uCGaAGcUGAUCCacuuCGUCGACGcgCCCGu -3' miRNA: 3'- uGC-UCaACUAGG----GCAGCUGCuaGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 16845 | 0.79 | 0.202608 |
Target: 5'- gGCGGGa-GAUCCCGUCGAUGAUCgCa -3' miRNA: 3'- -UGCUCaaCUAGGGCAGCUGCUAGgGc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 18833 | 0.71 | 0.511381 |
Target: 5'- -gGAGgacggUGGcgcggcUUUCGUCGACGGUCCCGg -3' miRNA: 3'- ugCUCa----ACU------AGGGCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 18891 | 0.66 | 0.830175 |
Target: 5'- cACGAGgaGAUCCuCGagGACGucgcgaacgaugacGUCCUGg -3' miRNA: 3'- -UGCUCaaCUAGG-GCagCUGC--------------UAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 18986 | 0.66 | 0.831949 |
Target: 5'- gGCGGGgaagucguaGGUCCCGcUGGCGGggugggaUCCCGg -3' miRNA: 3'- -UGCUCaa-------CUAGGGCaGCUGCU-------AGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 19808 | 0.69 | 0.639661 |
Target: 5'- cGCGGGgaGucGUUCCG-CGACGGUCUCGa -3' miRNA: 3'- -UGCUCaaC--UAGGGCaGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 21396 | 0.67 | 0.776499 |
Target: 5'- uCGGGcaUGAUCCgGUCGACG-UCCa- -3' miRNA: 3'- uGCUCa-ACUAGGgCAGCUGCuAGGgc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 21863 | 0.69 | 0.61794 |
Target: 5'- gACGAGUUcAUCuCCGUCGuCGAUaCCGu -3' miRNA: 3'- -UGCUCAAcUAG-GGCAGCuGCUAgGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 23185 | 0.67 | 0.75033 |
Target: 5'- -aGAGgUGGUCgaCGUCGAucgcgaucgucggcuCGAUCCCGa -3' miRNA: 3'- ugCUCaACUAGg-GCAGCU---------------GCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 25617 | 0.69 | 0.650516 |
Target: 5'- uACGAGUauAUCCCucGUCGAagaCGAUCUCGc -3' miRNA: 3'- -UGCUCAacUAGGG--CAGCU---GCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 26002 | 0.69 | 0.661355 |
Target: 5'- gACGAGUgcGAgCUCGUCGACGGgaCCGa -3' miRNA: 3'- -UGCUCAa-CUaGGGCAGCUGCUagGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 27648 | 0.67 | 0.776499 |
Target: 5'- uCGAGggGAUgCCGcCGGgGAUCCgGu -3' miRNA: 3'- uGCUCaaCUAgGGCaGCUgCUAGGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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