miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 3' -54.3 NC_004084.1 + 1516 0.67 0.73486
Target:  5'- gACGAGgaccUCuacaccgCUGUCGACGAUCCCu -3'
miRNA:   3'- -UGCUCaacuAG-------GGCAGCUGCUAGGGc -5'
16453 3' -54.3 NC_004084.1 + 5655 0.66 0.814775
Target:  5'- gGCGAGcgGAUCCagaaagccacCGUCGACGAga-CGg -3'
miRNA:   3'- -UGCUCaaCUAGG----------GCAGCUGCUaggGC- -5'
16453 3' -54.3 NC_004084.1 + 6221 0.72 0.451131
Target:  5'- gACGAGgucgaGAUUCCGgauagCGuCGAUCCCGa -3'
miRNA:   3'- -UGCUCaa---CUAGGGCa----GCuGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 8055 0.68 0.704343
Target:  5'- cGCGGcGUUGAUCUCGaaGAUGucgCCCGg -3'
miRNA:   3'- -UGCU-CAACUAGGGCagCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 9053 0.66 0.823903
Target:  5'- aGCGGGUaGAgUCgggcgaCGUCGACGAUCaCCu -3'
miRNA:   3'- -UGCUCAaCU-AGg-----GCAGCUGCUAG-GGc -5'
16453 3' -54.3 NC_004084.1 + 10040 0.7 0.596267
Target:  5'- uCGAGUcaccUCCGUUGACGAUCUCGa -3'
miRNA:   3'- uGCUCAacuaGGGCAGCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 12309 0.69 0.649431
Target:  5'- aGCGGGagaaacGGUCUcgaagaaCGUCGGCGAUCCUGa -3'
miRNA:   3'- -UGCUCaa----CUAGG-------GCAGCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 12837 0.68 0.71283
Target:  5'- aGCGGGUUGuugaacgcgaaCCCGUCGGCGuacUCCGc -3'
miRNA:   3'- -UGCUCAACua---------GGGCAGCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 14714 0.69 0.61794
Target:  5'- uCGaAGcUGAUCCacuuCGUCGACGcgCCCGu -3'
miRNA:   3'- uGC-UCaACUAGG----GCAGCUGCuaGGGC- -5'
16453 3' -54.3 NC_004084.1 + 16845 0.79 0.202608
Target:  5'- gGCGGGa-GAUCCCGUCGAUGAUCgCa -3'
miRNA:   3'- -UGCUCaaCUAGGGCAGCUGCUAGgGc -5'
16453 3' -54.3 NC_004084.1 + 18833 0.71 0.511381
Target:  5'- -gGAGgacggUGGcgcggcUUUCGUCGACGGUCCCGg -3'
miRNA:   3'- ugCUCa----ACU------AGGGCAGCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 18891 0.66 0.830175
Target:  5'- cACGAGgaGAUCCuCGagGACGucgcgaacgaugacGUCCUGg -3'
miRNA:   3'- -UGCUCaaCUAGG-GCagCUGC--------------UAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 18986 0.66 0.831949
Target:  5'- gGCGGGgaagucguaGGUCCCGcUGGCGGggugggaUCCCGg -3'
miRNA:   3'- -UGCUCaa-------CUAGGGCaGCUGCU-------AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 19808 0.69 0.639661
Target:  5'- cGCGGGgaGucGUUCCG-CGACGGUCUCGa -3'
miRNA:   3'- -UGCUCaaC--UAGGGCaGCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 21396 0.67 0.776499
Target:  5'- uCGGGcaUGAUCCgGUCGACG-UCCa- -3'
miRNA:   3'- uGCUCa-ACUAGGgCAGCUGCuAGGgc -5'
16453 3' -54.3 NC_004084.1 + 21863 0.69 0.61794
Target:  5'- gACGAGUUcAUCuCCGUCGuCGAUaCCGu -3'
miRNA:   3'- -UGCUCAAcUAG-GGCAGCuGCUAgGGC- -5'
16453 3' -54.3 NC_004084.1 + 23185 0.67 0.75033
Target:  5'- -aGAGgUGGUCgaCGUCGAucgcgaucgucggcuCGAUCCCGa -3'
miRNA:   3'- ugCUCaACUAGg-GCAGCU---------------GCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 25617 0.69 0.650516
Target:  5'- uACGAGUauAUCCCucGUCGAagaCGAUCUCGc -3'
miRNA:   3'- -UGCUCAacUAGGG--CAGCU---GCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 26002 0.69 0.661355
Target:  5'- gACGAGUgcGAgCUCGUCGACGGgaCCGa -3'
miRNA:   3'- -UGCUCAa-CUaGGGCAGCUGCUagGGC- -5'
16453 3' -54.3 NC_004084.1 + 27648 0.67 0.776499
Target:  5'- uCGAGggGAUgCCGcCGGgGAUCCgGu -3'
miRNA:   3'- uGCUCaaCUAgGGCaGCUgCUAGGgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.