Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16453 | 3' | -54.3 | NC_004084.1 | + | 12309 | 0.69 | 0.649431 |
Target: 5'- aGCGGGagaaacGGUCUcgaagaaCGUCGGCGAUCCUGa -3' miRNA: 3'- -UGCUCaa----CUAGG-------GCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 19808 | 0.69 | 0.639661 |
Target: 5'- cGCGGGgaGucGUUCCG-CGACGGUCUCGa -3' miRNA: 3'- -UGCUCaaC--UAGGGCaGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 55966 | 0.69 | 0.628799 |
Target: 5'- aGCGuGgcucgGAUCUCGUCGACGGUCg-- -3' miRNA: 3'- -UGCuCaa---CUAGGGCAGCUGCUAGggc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 51509 | 0.69 | 0.628799 |
Target: 5'- -aGAGUggGAgCUCGUCGagacggucGCGAUCCCGa -3' miRNA: 3'- ugCUCAa-CUaGGGCAGC--------UGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 21863 | 0.69 | 0.61794 |
Target: 5'- gACGAGUUcAUCuCCGUCGuCGAUaCCGu -3' miRNA: 3'- -UGCUCAAcUAG-GGCAGCuGCUAgGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 35375 | 0.69 | 0.61794 |
Target: 5'- cGCGaAGUgcgccaaGAUCaCGUCGACGAccuUCCCGa -3' miRNA: 3'- -UGC-UCAa------CUAGgGCAGCUGCU---AGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 14714 | 0.69 | 0.61794 |
Target: 5'- uCGaAGcUGAUCCacuuCGUCGACGcgCCCGu -3' miRNA: 3'- uGC-UCaACUAGG----GCAGCUGCuaGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 39574 | 0.7 | 0.607093 |
Target: 5'- uCGAGcag--CUCGUCGACGAggUCCCGg -3' miRNA: 3'- uGCUCaacuaGGGCAGCUGCU--AGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 10040 | 0.7 | 0.596267 |
Target: 5'- uCGAGUcaccUCCGUUGACGAUCUCGa -3' miRNA: 3'- uGCUCAacuaGGGCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 44153 | 0.7 | 0.574711 |
Target: 5'- gACGAGgaccuccaccUGGUCCCgGUCGACacuguUCCCGg -3' miRNA: 3'- -UGCUCa---------ACUAGGG-CAGCUGcu---AGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 51112 | 0.71 | 0.550154 |
Target: 5'- aGCGAGagGAgCUCGUCcaggaguacgcuugGGCGAUCCCGa -3' miRNA: 3'- -UGCUCaaCUaGGGCAG--------------CUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 44900 | 0.71 | 0.521756 |
Target: 5'- uCGA--UGAUCCCGgCGACGA-CCCGc -3' miRNA: 3'- uGCUcaACUAGGGCaGCUGCUaGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 18833 | 0.71 | 0.511381 |
Target: 5'- -gGAGgacggUGGcgcggcUUUCGUCGACGGUCCCGg -3' miRNA: 3'- ugCUCa----ACU------AGGGCAGCUGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 55351 | 0.71 | 0.511381 |
Target: 5'- gACGAGcgg--CCCGUCGACGAguUCCuCGa -3' miRNA: 3'- -UGCUCaacuaGGGCAGCUGCU--AGG-GC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 6221 | 0.72 | 0.451131 |
Target: 5'- gACGAGgucgaGAUUCCGgauagCGuCGAUCCCGa -3' miRNA: 3'- -UGCUCaa---CUAGGGCa----GCuGCUAGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 32399 | 0.74 | 0.360147 |
Target: 5'- uCGAGUccgcguucGGUCCCGUCGACGAgCUCGc -3' miRNA: 3'- uGCUCAa-------CUAGGGCAGCUGCUaGGGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 36703 | 0.76 | 0.282767 |
Target: 5'- gACGucgcgGAUCUCGUCGACGGUCgCCGa -3' miRNA: 3'- -UGCucaa-CUAGGGCAGCUGCUAG-GGC- -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 16845 | 0.79 | 0.202608 |
Target: 5'- gGCGGGa-GAUCCCGUCGAUGAUCgCa -3' miRNA: 3'- -UGCUCaaCUAGGGCAGCUGCUAGgGc -5' |
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16453 | 3' | -54.3 | NC_004084.1 | + | 40957 | 1.09 | 0.001585 |
Target: 5'- aACGAGUUGAUCCCGUCGACGAUCCCGg -3' miRNA: 3'- -UGCUCAACUAGGGCAGCUGCUAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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