miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 5' -51.1 NC_004084.1 + 12384 0.66 0.939542
Target:  5'- aGGCGAGggUCCGGuuAACGuccuGAUCGAUg- -3'
miRNA:   3'- -CUGCUCa-AGGCC--UUGCu---CUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 39773 0.66 0.934254
Target:  5'- cGACGccgaagaCGGcGACGAGGUCGGCCa -3'
miRNA:   3'- -CUGCucaag--GCC-UUGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 8793 0.66 0.916686
Target:  5'- cGACGGagcCCGGcGACGAGAUCu-CCGu -3'
miRNA:   3'- -CUGCUcaaGGCC-UUGCUCUAGuuGGC- -5'
16453 5' -51.1 NC_004084.1 + 49872 0.67 0.903559
Target:  5'- cGGCGAGUccUgCGGGACGAuGGgucuuguggcUCAACCu -3'
miRNA:   3'- -CUGCUCA--AgGCCUUGCU-CU----------AGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 18692 0.67 0.903559
Target:  5'- cGACGAGgaCUGGGGCcAGAagAGCUGg -3'
miRNA:   3'- -CUGCUCaaGGCCUUGcUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 28872 0.72 0.632159
Target:  5'- gGugGGcGUUCCGcAGCGAGAUCucGCCGc -3'
miRNA:   3'- -CugCU-CAAGGCcUUGCUCUAGu-UGGC- -5'
16453 5' -51.1 NC_004084.1 + 37219 0.71 0.687746
Target:  5'- uGACGAucuccuaCCGGGGCGAGAagAACCGc -3'
miRNA:   3'- -CUGCUcaa----GGCCUUGCUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 44463 0.71 0.709675
Target:  5'- cGACcGGUUCCGGAGCGAGuuugaGGCUc -3'
miRNA:   3'- -CUGcUCAAGGCCUUGCUCuag--UUGGc -5'
16453 5' -51.1 NC_004084.1 + 38490 0.71 0.731291
Target:  5'- gGACGAG--CUGGu-CGAGAUCGGCCu -3'
miRNA:   3'- -CUGCUCaaGGCCuuGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 40828 0.71 0.731291
Target:  5'- cGACGuccacGUUCCGGAGguCGAGGUCcccgaacuGGCCGu -3'
miRNA:   3'- -CUGCu----CAAGGCCUU--GCUCUAG--------UUGGC- -5'
16453 5' -51.1 NC_004084.1 + 28911 0.69 0.803104
Target:  5'- aGCGGGUgugcCCGaGAGCGAcGUCGGCCu -3'
miRNA:   3'- cUGCUCAa---GGC-CUUGCUcUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 11994 0.69 0.803104
Target:  5'- cGACGAGUUCCccAGCGAcGUCAACa- -3'
miRNA:   3'- -CUGCUCAAGGccUUGCUcUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 1107 0.69 0.822138
Target:  5'- --gGAGUUCUGGAA-GAuGGUCGAUCGg -3'
miRNA:   3'- cugCUCAAGGCCUUgCU-CUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 5356 0.69 0.822138
Target:  5'- cGGCGAGgaCUGGGACGAucUCGACg- -3'
miRNA:   3'- -CUGCUCaaGGCCUUGCUcuAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 53934 0.68 0.849124
Target:  5'- cACGAGggCCGGAAgGAGcUCGcgaaGCUGa -3'
miRNA:   3'- cUGCUCaaGGCCUUgCUCuAGU----UGGC- -5'
16453 5' -51.1 NC_004084.1 + 7853 0.68 0.85682
Target:  5'- gGACGAGUUCUGG-ACGGacauGAUCGAggagacuCCGc -3'
miRNA:   3'- -CUGCUCAAGGCCuUGCU----CUAGUU-------GGC- -5'
16453 5' -51.1 NC_004084.1 + 36302 0.68 0.857663
Target:  5'- -cCGAGUaCCGGGACGcccuGAUCGAugcCCGu -3'
miRNA:   3'- cuGCUCAaGGCCUUGCu---CUAGUU---GGC- -5'
16453 5' -51.1 NC_004084.1 + 30476 0.68 0.874006
Target:  5'- uACGAGgcgcugCCGGAcucCGAGAUCGAUuCGg -3'
miRNA:   3'- cUGCUCaa----GGCCUu--GCUCUAGUUG-GC- -5'
16453 5' -51.1 NC_004084.1 + 20074 0.67 0.881028
Target:  5'- cGACGAcg-CCGGAGCGAaccggaaGA-CGACCGu -3'
miRNA:   3'- -CUGCUcaaGGCCUUGCU-------CUaGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 19630 0.67 0.889321
Target:  5'- aGCGAGUUCCGGcucGACGAcGAUgGcguCCa -3'
miRNA:   3'- cUGCUCAAGGCC---UUGCU-CUAgUu--GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.