miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16454 3' -55.9 NC_004084.1 + 41373 0.66 0.758274
Target:  5'- cGUCAGUcaccgcaucGACGGGCGCaGACGCUCg -3'
miRNA:   3'- cCAGUCGacc------CUGCUUGUG-CUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 36947 0.66 0.758274
Target:  5'- cGUCGGUcGGGuACGGACuguuCaGCGUCCg -3'
miRNA:   3'- cCAGUCGaCCC-UGCUUGu---GcUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 52597 0.66 0.758274
Target:  5'- uGGUCcGgUGGGuCGAgGCAguCGAcaCGCCCg -3'
miRNA:   3'- -CCAGuCgACCCuGCU-UGU--GCU--GCGGG- -5'
16454 3' -55.9 NC_004084.1 + 48109 0.66 0.758274
Target:  5'- cGUCAGUgaGGACGGcauCugGuuGCCCg -3'
miRNA:   3'- cCAGUCGacCCUGCUu--GugCugCGGG- -5'
16454 3' -55.9 NC_004084.1 + 2030 0.66 0.758274
Target:  5'- --cCAGCUGGGcGCGAAgGUGACugGCCUu -3'
miRNA:   3'- ccaGUCGACCC-UGCUUgUGCUG--CGGG- -5'
16454 3' -55.9 NC_004084.1 + 38737 0.66 0.756262
Target:  5'- uGGUCGGCcagaacgaccagGGGAggcacgucCGAugacGCACGACGaCCUu -3'
miRNA:   3'- -CCAGUCGa-----------CCCU--------GCU----UGUGCUGC-GGG- -5'
16454 3' -55.9 NC_004084.1 + 41439 0.66 0.752226
Target:  5'- ---aAGCUGGGcCG-ACGCGAUcgaggucuugcagugGCCCg -3'
miRNA:   3'- ccagUCGACCCuGCuUGUGCUG---------------CGGG- -5'
16454 3' -55.9 NC_004084.1 + 8329 0.66 0.748171
Target:  5'- ----cGCUcGGAUGAACcCGGCGCUCa -3'
miRNA:   3'- ccaguCGAcCCUGCUUGuGCUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 3340 0.66 0.748171
Target:  5'- -cUCGGacggGGGAgGAGCGCGcCGgCCa -3'
miRNA:   3'- ccAGUCga--CCCUgCUUGUGCuGCgGG- -5'
16454 3' -55.9 NC_004084.1 + 27471 0.66 0.748171
Target:  5'- cGGUCGGCguccuCGAGCuCGACGUCg -3'
miRNA:   3'- -CCAGUCGacccuGCUUGuGCUGCGGg -5'
16454 3' -55.9 NC_004084.1 + 28473 0.66 0.748171
Target:  5'- -aUCAcCUGGGACuGGCACGGaGCCa -3'
miRNA:   3'- ccAGUcGACCCUGcUUGUGCUgCGGg -5'
16454 3' -55.9 NC_004084.1 + 54816 0.66 0.748171
Target:  5'- cGGUCcaGGCcgucugGaGGACGuucguCGCGGuCGCCCg -3'
miRNA:   3'- -CCAG--UCGa-----C-CCUGCuu---GUGCU-GCGGG- -5'
16454 3' -55.9 NC_004084.1 + 47366 0.66 0.745117
Target:  5'- --cCGGCUGGuucugcgucucccaGuCGAACACGAuCGCCg -3'
miRNA:   3'- ccaGUCGACC--------------CuGCUUGUGCU-GCGGg -5'
16454 3' -55.9 NC_004084.1 + 47230 0.66 0.742054
Target:  5'- uGUCGcagcuGCUGGaACGAACGauacgaccggcucgcCGGCGCCUa -3'
miRNA:   3'- cCAGU-----CGACCcUGCUUGU---------------GCUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 35810 0.66 0.737955
Target:  5'- --gCAGUguacuccGGGcCGAGCACGAagGCCCc -3'
miRNA:   3'- ccaGUCGa------CCCuGCUUGUGCUg-CGGG- -5'
16454 3' -55.9 NC_004084.1 + 30423 0.66 0.736928
Target:  5'- cGGgCGGCgacGGaagcgauGGCGAGgACGACGUCCc -3'
miRNA:   3'- -CCaGUCGa--CC-------CUGCUUgUGCUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 21386 0.66 0.727638
Target:  5'- cGGUgcCAGCUcGGGcAUGAuccGguCGACGUCCa -3'
miRNA:   3'- -CCA--GUCGA-CCC-UGCU---UguGCUGCGGG- -5'
16454 3' -55.9 NC_004084.1 + 11190 0.66 0.727638
Target:  5'- cGGUCgaagcAGCgUGGGACGAcaACGGaGUCCc -3'
miRNA:   3'- -CCAG-----UCG-ACCCUGCUugUGCUgCGGG- -5'
16454 3' -55.9 NC_004084.1 + 10939 0.66 0.727638
Target:  5'- aGGUCAaaUGGGAuggcgaguccuaCGAAUACGAC-CUCg -3'
miRNA:   3'- -CCAGUcgACCCU------------GCUUGUGCUGcGGG- -5'
16454 3' -55.9 NC_004084.1 + 27173 0.66 0.727638
Target:  5'- cGGUgAGaaucucaGGACGAuCGCGACGCUg -3'
miRNA:   3'- -CCAgUCgac----CCUGCUuGUGCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.