miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16454 5' -52.5 NC_004084.1 + 22354 0.66 0.878966
Target:  5'- gCGGuccuCGUCGUAUcccCACCAGGGUa- -3'
miRNA:   3'- -GCUuu--GCGGCAUGaa-GUGGUCCCAga -5'
16454 5' -52.5 NC_004084.1 + 8646 0.66 0.871105
Target:  5'- cCGAG--GCUGUAgUccUCGCCgAGGGUCUg -3'
miRNA:   3'- -GCUUugCGGCAUgA--AGUGG-UCCCAGA- -5'
16454 5' -52.5 NC_004084.1 + 23499 0.66 0.86299
Target:  5'- aCGAGAUgGCCGgggaGCUUCgagugcuccgACCAGGGaUCg -3'
miRNA:   3'- -GCUUUG-CGGCa---UGAAG----------UGGUCCC-AGa -5'
16454 5' -52.5 NC_004084.1 + 28615 0.67 0.846031
Target:  5'- ---cGCGCCGUACUUCuGCCAcgacuGGGa-- -3'
miRNA:   3'- gcuuUGCGGCAUGAAG-UGGU-----CCCaga -5'
16454 5' -52.5 NC_004084.1 + 37328 0.67 0.837202
Target:  5'- uCGAAguGCuCCGUACUcucgUCACCAGcGUCg -3'
miRNA:   3'- -GCUU--UGcGGCAUGA----AGUGGUCcCAGa -5'
16454 5' -52.5 NC_004084.1 + 35933 0.67 0.809433
Target:  5'- aCGAGcAUGUCcccgGCgUCGCCGGGGUCg -3'
miRNA:   3'- -GCUU-UGCGGca--UGaAGUGGUCCCAGa -5'
16454 5' -52.5 NC_004084.1 + 36219 0.67 0.809433
Target:  5'- uCGuGACGuuGUGCUcggagaacUCGCCuaccGGGUCg -3'
miRNA:   3'- -GCuUUGCggCAUGA--------AGUGGu---CCCAGa -5'
16454 5' -52.5 NC_004084.1 + 58198 0.68 0.799782
Target:  5'- uCGcu-CGCCGgucgACUUCGCU-GGGUCa -3'
miRNA:   3'- -GCuuuGCGGCa---UGAAGUGGuCCCAGa -5'
16454 5' -52.5 NC_004084.1 + 55814 0.68 0.799782
Target:  5'- aGAuACGUCG-ACUUCACCucGGcGUCg -3'
miRNA:   3'- gCUuUGCGGCaUGAAGUGGu-CC-CAGa -5'
16454 5' -52.5 NC_004084.1 + 39374 0.68 0.789952
Target:  5'- gGAcGACGCCGU-CUUCACguGcGUCUa -3'
miRNA:   3'- gCU-UUGCGGCAuGAAGUGguCcCAGA- -5'
16454 5' -52.5 NC_004084.1 + 48928 0.68 0.769799
Target:  5'- cCGGucGGCGCCGgGCUUCAgcuCCAGGugaGUCUc -3'
miRNA:   3'- -GCU--UUGCGGCaUGAAGU---GGUCC---CAGA- -5'
16454 5' -52.5 NC_004084.1 + 12817 0.68 0.749067
Target:  5'- cCGGGACGuuGUACUUCGagagcGGGUUg -3'
miRNA:   3'- -GCUUUGCggCAUGAAGUggu--CCCAGa -5'
16454 5' -52.5 NC_004084.1 + 23586 0.69 0.706238
Target:  5'- aCGAcGACGUCGUGCUcCGCCGGGaaCUg -3'
miRNA:   3'- -GCU-UUGCGGCAUGAaGUGGUCCcaGA- -5'
16454 5' -52.5 NC_004084.1 + 52425 0.69 0.706238
Target:  5'- uGGAGCGagCGUA--UCACCuGGGUCUa -3'
miRNA:   3'- gCUUUGCg-GCAUgaAGUGGuCCCAGA- -5'
16454 5' -52.5 NC_004084.1 + 42017 0.7 0.639997
Target:  5'- uCGAGugGCCGUcgcgagcgagGCggucgacaucgUCAUUAGGGUCUg -3'
miRNA:   3'- -GCUUugCGGCA----------UGa----------AGUGGUCCCAGA- -5'
16454 5' -52.5 NC_004084.1 + 41218 1.09 0.002263
Target:  5'- gCGAAACGCCGUACUUCACCAGGGUCUa -3'
miRNA:   3'- -GCUUUGCGGCAUGAAGUGGUCCCAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.