miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 17290 0.66 0.740325
Target:  5'- gGCGgUGGCGGCGGuGGCGgcgagcacaucgagaUUACGAUCg -3'
miRNA:   3'- -UGCaGCUGCUGCUcCCGC---------------AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 19924 0.66 0.736216
Target:  5'- uCG-CGACGAuCGAGGGCG--AgGAUCc -3'
miRNA:   3'- uGCaGCUGCU-GCUCCCGCagUgCUAG- -5'
16455 5' -56 NC_004084.1 + 17523 0.66 0.736216
Target:  5'- uCGUCGGauauCGAUGuugaaGGCGUCACGAg- -3'
miRNA:   3'- uGCAGCU----GCUGCuc---CCGCAGUGCUag -5'
16455 5' -56 NC_004084.1 + 40414 0.66 0.725875
Target:  5'- cCGUCGACGAaaaaGAGGaGCuGUUcgaGAUCg -3'
miRNA:   3'- uGCAGCUGCUg---CUCC-CG-CAGug-CUAG- -5'
16455 5' -56 NC_004084.1 + 36611 0.66 0.725875
Target:  5'- cCGUCGACGcugacguUGAGGuGCaucggcUCGCGAUCg -3'
miRNA:   3'- uGCAGCUGCu------GCUCC-CGc-----AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 47001 0.66 0.725875
Target:  5'- gACGaCcGCGAguuccuCGAGGaCGUCGCGAUCg -3'
miRNA:   3'- -UGCaGcUGCU------GCUCCcGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 16649 0.66 0.722754
Target:  5'- uCGUCGACGucgucCGGGagguccucgucgccGGCGUCGuccCGAUCg -3'
miRNA:   3'- uGCAGCUGCu----GCUC--------------CCGCAGU---GCUAG- -5'
16455 5' -56 NC_004084.1 + 43800 0.66 0.715444
Target:  5'- -aGUcCGGCGGCGAGGaGCGcCGgGAg- -3'
miRNA:   3'- ugCA-GCUGCUGCUCC-CGCaGUgCUag -5'
16455 5' -56 NC_004084.1 + 53255 0.66 0.715444
Target:  5'- uCGUCGACGGCGAcgagaucgggccGGGCGacguccUgGCGAc- -3'
miRNA:   3'- uGCAGCUGCUGCU------------CCCGC------AgUGCUag -5'
16455 5' -56 NC_004084.1 + 16856 0.66 0.698596
Target:  5'- cCGUCGAUGAucgcaagugggaucuCGAGcgcGGCGUCugcucCGAUCg -3'
miRNA:   3'- uGCAGCUGCU---------------GCUC---CCGCAGu----GCUAG- -5'
16455 5' -56 NC_004084.1 + 41609 0.66 0.694358
Target:  5'- uACGUCGAgGACGAacgcGaGGCG--ACGGUCc -3'
miRNA:   3'- -UGCAGCUgCUGCU----C-CCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 19131 0.66 0.694358
Target:  5'- uGC-UCGACGAuCGAGuccGCGaCGCGAUCg -3'
miRNA:   3'- -UGcAGCUGCU-GCUCc--CGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 16093 0.67 0.683723
Target:  5'- uCGUCGAucuCGuccCGAcGGuCGUCGCGAUCg -3'
miRNA:   3'- uGCAGCU---GCu--GCUcCC-GCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 36195 0.67 0.683723
Target:  5'- aGCGuUCGACGGCGA-GGCGgggaaccucUC-CGGUCu -3'
miRNA:   3'- -UGC-AGCUGCUGCUcCCGC---------AGuGCUAG- -5'
16455 5' -56 NC_004084.1 + 1226 0.67 0.673041
Target:  5'- uCGgCGGCGGgauCGAGGGCGaUCGCGcccAUCu -3'
miRNA:   3'- uGCaGCUGCU---GCUCCCGC-AGUGC---UAG- -5'
16455 5' -56 NC_004084.1 + 15390 0.67 0.673041
Target:  5'- -aGUCGAagaGAguucUGAGGGCGUCuCGAg- -3'
miRNA:   3'- ugCAGCUg--CU----GCUCCCGCAGuGCUag -5'
16455 5' -56 NC_004084.1 + 4024 0.67 0.673041
Target:  5'- gGCGUCGAcuggaaCGGCGAucGCGUCAgagUGAUCu -3'
miRNA:   3'- -UGCAGCU------GCUGCUccCGCAGU---GCUAG- -5'
16455 5' -56 NC_004084.1 + 48193 0.67 0.673041
Target:  5'- gGCGaccucaagCGGCGACGGGuGGCGgaaaGCGGUg -3'
miRNA:   3'- -UGCa-------GCUGCUGCUC-CCGCag--UGCUAg -5'
16455 5' -56 NC_004084.1 + 17128 0.67 0.662322
Target:  5'- gACGUCGAUGAgGucGGCGguUCACuGAUg -3'
miRNA:   3'- -UGCAGCUGCUgCucCCGC--AGUG-CUAg -5'
16455 5' -56 NC_004084.1 + 17173 0.67 0.662322
Target:  5'- gACGUCGAaGGCGAGGGaggCACauuGUCg -3'
miRNA:   3'- -UGCAGCUgCUGCUCCCgcaGUGc--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.