Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16455 | 5' | -56 | NC_004084.1 | + | 53497 | 0.69 | 0.523825 |
Target: 5'- uACGUCGACGGCGAaGuCGUCguGCGGUa -3' miRNA: 3'- -UGCAGCUGCUGCUcCcGCAG--UGCUAg -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 9843 | 0.69 | 0.544662 |
Target: 5'- uACGagGuCGGCGAGGGCGgcucaCGCGGg- -3' miRNA: 3'- -UGCagCuGCUGCUCCCGCa----GUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 51415 | 0.69 | 0.555182 |
Target: 5'- cCGUCGAgGccuuCGAGGGCGaCACgcuGAUCu -3' miRNA: 3'- uGCAGCUgCu---GCUCCCGCaGUG---CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 16932 | 0.68 | 0.608515 |
Target: 5'- uGCGguUCGGCauCGGcGGGCGUCGCGAcgUCg -3' miRNA: 3'- -UGC--AGCUGcuGCU-CCCGCAGUGCU--AG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 29342 | 0.68 | 0.630042 |
Target: 5'- cGCGgCGACGACGcccccgagcGGGCgGUCGCGGc- -3' miRNA: 3'- -UGCaGCUGCUGCu--------CCCG-CAGUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 28544 | 0.68 | 0.608515 |
Target: 5'- gACGUCuuuGACGACGAGaucaccGCGUgGaCGAUCa -3' miRNA: 3'- -UGCAG---CUGCUGCUCc-----CGCAgU-GCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 45985 | 0.68 | 0.619274 |
Target: 5'- cACGUCGACG-CGAucauggacGGCGagaagacggUCACGAUCc -3' miRNA: 3'- -UGCAGCUGCuGCUc-------CCGC---------AGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 55253 | 0.68 | 0.597777 |
Target: 5'- cCGUCGACGACGucuacggucGGcGGCGUguaGAUCg -3' miRNA: 3'- uGCAGCUGCUGC---------UC-CCGCAgugCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 54257 | 0.68 | 0.597777 |
Target: 5'- cCGUCGGCGAgguUGAGGuaGUCcucguucuggACGAUCu -3' miRNA: 3'- uGCAGCUGCU---GCUCCcgCAG----------UGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41897 | 0.68 | 0.587066 |
Target: 5'- -gGUCcACGACGAccGcGGCG-CGCGAUCg -3' miRNA: 3'- ugCAGcUGCUGCU--C-CCGCaGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41080 | 0.68 | 0.619274 |
Target: 5'- uACGUCGACGAgaCGAugcGGGCcGUCGCc--- -3' miRNA: 3'- -UGCAGCUGCU--GCU---CCCG-CAGUGcuag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 51616 | 0.68 | 0.619274 |
Target: 5'- gACGUCGACGGCGcGGGa---GCuGAUCc -3' miRNA: 3'- -UGCAGCUGCUGCuCCCgcagUG-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 7080 | 0.68 | 0.576392 |
Target: 5'- cCGUCGACGAagaucuCGcGGGCG-CAcuCGAUCg -3' miRNA: 3'- uGCAGCUGCU------GCuCCCGCaGU--GCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 50020 | 0.68 | 0.597777 |
Target: 5'- uUGUCGcCGAgCG-GGGUGUCcCGGUCg -3' miRNA: 3'- uGCAGCuGCU-GCuCCCGCAGuGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 31353 | 0.68 | 0.630042 |
Target: 5'- uCGUCGACGuCGAGcauCG-CGCGAUCg -3' miRNA: 3'- uGCAGCUGCuGCUCcc-GCaGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 19314 | 0.68 | 0.631119 |
Target: 5'- -gGUCGACGACGAucgacGGGCGacugucucacucaagCGCGAc- -3' miRNA: 3'- ugCAGCUGCUGCU-----CCCGCa--------------GUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 15390 | 0.67 | 0.673041 |
Target: 5'- -aGUCGAagaGAguucUGAGGGCGUCuCGAg- -3' miRNA: 3'- ugCAGCUg--CU----GCUCCCGCAGuGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 1226 | 0.67 | 0.673041 |
Target: 5'- uCGgCGGCGGgauCGAGGGCGaUCGCGcccAUCu -3' miRNA: 3'- uGCaGCUGCU---GCUCCCGC-AGUGC---UAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 48193 | 0.67 | 0.673041 |
Target: 5'- gGCGaccucaagCGGCGACGGGuGGCGgaaaGCGGUg -3' miRNA: 3'- -UGCa-------GCUGCUGCUC-CCGCag--UGCUAg -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 36195 | 0.67 | 0.683723 |
Target: 5'- aGCGuUCGACGGCGA-GGCGgggaaccucUC-CGGUCu -3' miRNA: 3'- -UGC-AGCUGCUGCUcCCGC---------AGuGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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