miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 41783 1.1 0.000963
Target:  5'- gACGUCGACGACGAGGGCGUCACGAUCg -3'
miRNA:   3'- -UGCAGCUGCUGCUCCCGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 6260 0.81 0.110675
Target:  5'- uCGUCGACGugGucGGCGUcCAUGAUCa -3'
miRNA:   3'- uGCAGCUGCugCucCCGCA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 31202 0.79 0.147838
Target:  5'- cGCGUCGACGucgucgcgaaccuCGAGGuacgcauucaGCGUCGCGAUCg -3'
miRNA:   3'- -UGCAGCUGCu------------GCUCC----------CGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 7414 0.78 0.161989
Target:  5'- gGCGaUCGACGACGAGGGCGaugCcgACGGUg -3'
miRNA:   3'- -UGC-AGCUGCUGCUCCCGCa--G--UGCUAg -5'
16455 5' -56 NC_004084.1 + 22805 0.76 0.210884
Target:  5'- aGCGUCGA----GAGGGCGUCACgGAUCg -3'
miRNA:   3'- -UGCAGCUgcugCUCCCGCAGUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 55361 0.75 0.245974
Target:  5'- cCGUCGACGAguuccuCGAGGGUG--GCGAUCa -3'
miRNA:   3'- uGCAGCUGCU------GCUCCCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 29430 0.74 0.281572
Target:  5'- cCGUCGACGGCGAGcuucaccgcgaacgcGGCGUgggCGCGAUg -3'
miRNA:   3'- uGCAGCUGCUGCUC---------------CCGCA---GUGCUAg -5'
16455 5' -56 NC_004084.1 + 3179 0.73 0.315022
Target:  5'- uCGUCGACGGCGAGGaCGUgaACGAg- -3'
miRNA:   3'- uGCAGCUGCUGCUCCcGCAg-UGCUag -5'
16455 5' -56 NC_004084.1 + 29397 0.72 0.363032
Target:  5'- -gGUCgGGCGGCcacuccuGGGGCGUCGCGGUUg -3'
miRNA:   3'- ugCAG-CUGCUGc------UCCCGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 1023 0.72 0.370658
Target:  5'- gACGUCGACGcgauCGGGGGCG-CGCucgaguucgccgaGGUCg -3'
miRNA:   3'- -UGCAGCUGCu---GCUCCCGCaGUG-------------CUAG- -5'
16455 5' -56 NC_004084.1 + 21776 0.72 0.388871
Target:  5'- gGCGgcaUCGACGuCGGGGcCGUCACcGAUCa -3'
miRNA:   3'- -UGC---AGCUGCuGCUCCcGCAGUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 2403 0.71 0.406754
Target:  5'- cCGaCGACGAguCGAGGGCaaaGUaCGCGAUCg -3'
miRNA:   3'- uGCaGCUGCU--GCUCCCG---CA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 33406 0.71 0.414968
Target:  5'- uGCGUCGACGcacgcguACGAGGGCcUCAacAUCg -3'
miRNA:   3'- -UGCAGCUGC-------UGCUCCCGcAGUgcUAG- -5'
16455 5' -56 NC_004084.1 + 10082 0.71 0.444021
Target:  5'- cACGcCGAgGACGAaggGGGCGcgACGAUCa -3'
miRNA:   3'- -UGCaGCUgCUGCU---CCCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 36252 0.71 0.453635
Target:  5'- -gGUCGACGuccuCGAGugcgccgaGGCGcUCGCGGUCa -3'
miRNA:   3'- ugCAGCUGCu---GCUC--------CCGC-AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 10001 0.7 0.462382
Target:  5'- gACGUCGACGAagaucucCGAGauGGCGgcCACGAUg -3'
miRNA:   3'- -UGCAGCUGCU-------GCUC--CCGCa-GUGCUAg -5'
16455 5' -56 NC_004084.1 + 47387 0.7 0.46336
Target:  5'- uCGUCGACGGCGAgcuccaGGGCGcgACGAc- -3'
miRNA:   3'- uGCAGCUGCUGCU------CCCGCagUGCUag -5'
16455 5' -56 NC_004084.1 + 7475 0.7 0.473193
Target:  5'- aGCGgCGACGGCGAaGGCGagACGAg- -3'
miRNA:   3'- -UGCaGCUGCUGCUcCCGCagUGCUag -5'
16455 5' -56 NC_004084.1 + 53497 0.69 0.523825
Target:  5'- uACGUCGACGGCGAaGuCGUCguGCGGUa -3'
miRNA:   3'- -UGCAGCUGCUGCUcCcGCAG--UGCUAg -5'
16455 5' -56 NC_004084.1 + 41219 0.69 0.544662
Target:  5'- aGCGUCGACu-CGAGGGC-UgACGAc- -3'
miRNA:   3'- -UGCAGCUGcuGCUCCCGcAgUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.