miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 17173 0.67 0.662322
Target:  5'- gACGUCGAaGGCGAGGGaggCACauuGUCg -3'
miRNA:   3'- -UGCAGCUgCUGCUCCCgcaGUGc--UAG- -5'
16455 5' -56 NC_004084.1 + 28281 0.67 0.651576
Target:  5'- gAC-UCGugGACGGGaGUcUCGCGAUCg -3'
miRNA:   3'- -UGcAGCugCUGCUCcCGcAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 31111 0.67 0.651576
Target:  5'- uACGUCgccagGAUGAUGAacaGcGGCGcCGCGAUCg -3'
miRNA:   3'- -UGCAG-----CUGCUGCU---C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 32246 0.67 0.640813
Target:  5'- aGCGUCuAC-ACGAGGGCGgacaACgGAUCg -3'
miRNA:   3'- -UGCAGcUGcUGCUCCCGCag--UG-CUAG- -5'
16455 5' -56 NC_004084.1 + 21821 0.67 0.640813
Target:  5'- aGCGUCGACGGUGAGGcGCuggACGAUg -3'
miRNA:   3'- -UGCAGCUGCUGCUCC-CGcagUGCUAg -5'
16455 5' -56 NC_004084.1 + 23038 0.67 0.640813
Target:  5'- uCGUCGACG-UGAucuuGGCGcacuUCGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUc---CCGC----AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 19314 0.68 0.631119
Target:  5'- -gGUCGACGACGAucgacGGGCGacugucucacucaagCGCGAc- -3'
miRNA:   3'- ugCAGCUGCUGCU-----CCCGCa--------------GUGCUag -5'
16455 5' -56 NC_004084.1 + 29342 0.68 0.630042
Target:  5'- cGCGgCGACGACGcccccgagcGGGCgGUCGCGGc- -3'
miRNA:   3'- -UGCaGCUGCUGCu--------CCCG-CAGUGCUag -5'
16455 5' -56 NC_004084.1 + 31353 0.68 0.630042
Target:  5'- uCGUCGACGuCGAGcauCG-CGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUCcc-GCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 41080 0.68 0.619274
Target:  5'- uACGUCGACGAgaCGAugcGGGCcGUCGCc--- -3'
miRNA:   3'- -UGCAGCUGCU--GCU---CCCG-CAGUGcuag -5'
16455 5' -56 NC_004084.1 + 51616 0.68 0.619274
Target:  5'- gACGUCGACGGCGcGGGa---GCuGAUCc -3'
miRNA:   3'- -UGCAGCUGCUGCuCCCgcagUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 45985 0.68 0.619274
Target:  5'- cACGUCGACG-CGAucauggacGGCGagaagacggUCACGAUCc -3'
miRNA:   3'- -UGCAGCUGCuGCUc-------CCGC---------AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 28544 0.68 0.608515
Target:  5'- gACGUCuuuGACGACGAGaucaccGCGUgGaCGAUCa -3'
miRNA:   3'- -UGCAG---CUGCUGCUCc-----CGCAgU-GCUAG- -5'
16455 5' -56 NC_004084.1 + 16932 0.68 0.608515
Target:  5'- uGCGguUCGGCauCGGcGGGCGUCGCGAcgUCg -3'
miRNA:   3'- -UGC--AGCUGcuGCU-CCCGCAGUGCU--AG- -5'
16455 5' -56 NC_004084.1 + 55253 0.68 0.597777
Target:  5'- cCGUCGACGACGucuacggucGGcGGCGUguaGAUCg -3'
miRNA:   3'- uGCAGCUGCUGC---------UC-CCGCAgugCUAG- -5'
16455 5' -56 NC_004084.1 + 54257 0.68 0.597777
Target:  5'- cCGUCGGCGAgguUGAGGuaGUCcucguucuggACGAUCu -3'
miRNA:   3'- uGCAGCUGCU---GCUCCcgCAG----------UGCUAG- -5'
16455 5' -56 NC_004084.1 + 50020 0.68 0.597777
Target:  5'- uUGUCGcCGAgCG-GGGUGUCcCGGUCg -3'
miRNA:   3'- uGCAGCuGCU-GCuCCCGCAGuGCUAG- -5'
16455 5' -56 NC_004084.1 + 41897 0.68 0.587066
Target:  5'- -gGUCcACGACGAccGcGGCG-CGCGAUCg -3'
miRNA:   3'- ugCAGcUGCUGCU--C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 7080 0.68 0.576392
Target:  5'- cCGUCGACGAagaucuCGcGGGCG-CAcuCGAUCg -3'
miRNA:   3'- uGCAGCUGCU------GCuCCCGCaGU--GCUAG- -5'
16455 5' -56 NC_004084.1 + 51415 0.69 0.555182
Target:  5'- cCGUCGAgGccuuCGAGGGCGaCACgcuGAUCu -3'
miRNA:   3'- uGCAGCUgCu---GCUCCCGCaGUG---CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.