miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 1023 0.72 0.370658
Target:  5'- gACGUCGACGcgauCGGGGGCG-CGCucgaguucgccgaGGUCg -3'
miRNA:   3'- -UGCAGCUGCu---GCUCCCGCaGUG-------------CUAG- -5'
16455 5' -56 NC_004084.1 + 1226 0.67 0.673041
Target:  5'- uCGgCGGCGGgauCGAGGGCGaUCGCGcccAUCu -3'
miRNA:   3'- uGCaGCUGCU---GCUCCCGC-AGUGC---UAG- -5'
16455 5' -56 NC_004084.1 + 2403 0.71 0.406754
Target:  5'- cCGaCGACGAguCGAGGGCaaaGUaCGCGAUCg -3'
miRNA:   3'- uGCaGCUGCU--GCUCCCG---CA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 3179 0.73 0.315022
Target:  5'- uCGUCGACGGCGAGGaCGUgaACGAg- -3'
miRNA:   3'- uGCAGCUGCUGCUCCcGCAg-UGCUag -5'
16455 5' -56 NC_004084.1 + 4024 0.67 0.673041
Target:  5'- gGCGUCGAcuggaaCGGCGAucGCGUCAgagUGAUCu -3'
miRNA:   3'- -UGCAGCU------GCUGCUccCGCAGU---GCUAG- -5'
16455 5' -56 NC_004084.1 + 6260 0.81 0.110675
Target:  5'- uCGUCGACGugGucGGCGUcCAUGAUCa -3'
miRNA:   3'- uGCAGCUGCugCucCCGCA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 6878 0.67 0.662322
Target:  5'- -gGUCGugGAugcCGAGGuaCGUCGgGAUCg -3'
miRNA:   3'- ugCAGCugCU---GCUCCc-GCAGUgCUAG- -5'
16455 5' -56 NC_004084.1 + 7080 0.68 0.576392
Target:  5'- cCGUCGACGAagaucuCGcGGGCG-CAcuCGAUCg -3'
miRNA:   3'- uGCAGCUGCU------GCuCCCGCaGU--GCUAG- -5'
16455 5' -56 NC_004084.1 + 7414 0.78 0.161989
Target:  5'- gGCGaUCGACGACGAGGGCGaugCcgACGGUg -3'
miRNA:   3'- -UGC-AGCUGCUGCUCCCGCa--G--UGCUAg -5'
16455 5' -56 NC_004084.1 + 7475 0.7 0.473193
Target:  5'- aGCGgCGACGGCGAaGGCGagACGAg- -3'
miRNA:   3'- -UGCaGCUGCUGCUcCCGCagUGCUag -5'
16455 5' -56 NC_004084.1 + 9843 0.69 0.544662
Target:  5'- uACGagGuCGGCGAGGGCGgcucaCGCGGg- -3'
miRNA:   3'- -UGCagCuGCUGCUCCCGCa----GUGCUag -5'
16455 5' -56 NC_004084.1 + 10001 0.7 0.462382
Target:  5'- gACGUCGACGAagaucucCGAGauGGCGgcCACGAUg -3'
miRNA:   3'- -UGCAGCUGCU-------GCUC--CCGCa-GUGCUAg -5'
16455 5' -56 NC_004084.1 + 10082 0.71 0.444021
Target:  5'- cACGcCGAgGACGAaggGGGCGcgACGAUCa -3'
miRNA:   3'- -UGCaGCUgCUGCU---CCCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 11045 0.69 0.544662
Target:  5'- cCGUCGACGACGcggacgaaGGGGCGgccgCcgACGAa- -3'
miRNA:   3'- uGCAGCUGCUGC--------UCCCGCa---G--UGCUag -5'
16455 5' -56 NC_004084.1 + 15390 0.67 0.673041
Target:  5'- -aGUCGAagaGAguucUGAGGGCGUCuCGAg- -3'
miRNA:   3'- ugCAGCUg--CU----GCUCCCGCAGuGCUag -5'
16455 5' -56 NC_004084.1 + 16093 0.67 0.683723
Target:  5'- uCGUCGAucuCGuccCGAcGGuCGUCGCGAUCg -3'
miRNA:   3'- uGCAGCU---GCu--GCUcCC-GCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 16649 0.66 0.722754
Target:  5'- uCGUCGACGucgucCGGGagguccucgucgccGGCGUCGuccCGAUCg -3'
miRNA:   3'- uGCAGCUGCu----GCUC--------------CCGCAGU---GCUAG- -5'
16455 5' -56 NC_004084.1 + 16856 0.66 0.698596
Target:  5'- cCGUCGAUGAucgcaagugggaucuCGAGcgcGGCGUCugcucCGAUCg -3'
miRNA:   3'- uGCAGCUGCU---------------GCUC---CCGCAGu----GCUAG- -5'
16455 5' -56 NC_004084.1 + 16932 0.68 0.608515
Target:  5'- uGCGguUCGGCauCGGcGGGCGUCGCGAcgUCg -3'
miRNA:   3'- -UGC--AGCUGcuGCU-CCCGCAGUGCU--AG- -5'
16455 5' -56 NC_004084.1 + 17128 0.67 0.662322
Target:  5'- gACGUCGAUGAgGucGGCGguUCACuGAUg -3'
miRNA:   3'- -UGCAGCUGCUgCucCCGC--AGUG-CUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.