Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16455 | 5' | -56 | NC_004084.1 | + | 36195 | 0.67 | 0.683723 |
Target: 5'- aGCGuUCGACGGCGA-GGCGgggaaccucUC-CGGUCu -3' miRNA: 3'- -UGC-AGCUGCUGCUcCCGC---------AGuGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 36252 | 0.71 | 0.453635 |
Target: 5'- -gGUCGACGuccuCGAGugcgccgaGGCGcUCGCGGUCa -3' miRNA: 3'- ugCAGCUGCu---GCUC--------CCGC-AGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 36611 | 0.66 | 0.725875 |
Target: 5'- cCGUCGACGcugacguUGAGGuGCaucggcUCGCGAUCg -3' miRNA: 3'- uGCAGCUGCu------GCUCC-CGc-----AGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 40414 | 0.66 | 0.725875 |
Target: 5'- cCGUCGACGAaaaaGAGGaGCuGUUcgaGAUCg -3' miRNA: 3'- uGCAGCUGCUg---CUCC-CG-CAGug-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41080 | 0.68 | 0.619274 |
Target: 5'- uACGUCGACGAgaCGAugcGGGCcGUCGCc--- -3' miRNA: 3'- -UGCAGCUGCU--GCU---CCCG-CAGUGcuag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41219 | 0.69 | 0.544662 |
Target: 5'- aGCGUCGACu-CGAGGGC-UgACGAc- -3' miRNA: 3'- -UGCAGCUGcuGCUCCCGcAgUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41609 | 0.66 | 0.694358 |
Target: 5'- uACGUCGAgGACGAacgcGaGGCG--ACGGUCc -3' miRNA: 3'- -UGCAGCUgCUGCU----C-CCGCagUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41783 | 1.1 | 0.000963 |
Target: 5'- gACGUCGACGACGAGGGCGUCACGAUCg -3' miRNA: 3'- -UGCAGCUGCUGCUCCCGCAGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 41897 | 0.68 | 0.587066 |
Target: 5'- -gGUCcACGACGAccGcGGCG-CGCGAUCg -3' miRNA: 3'- ugCAGcUGCUGCU--C-CCGCaGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 43800 | 0.66 | 0.715444 |
Target: 5'- -aGUcCGGCGGCGAGGaGCGcCGgGAg- -3' miRNA: 3'- ugCA-GCUGCUGCUCC-CGCaGUgCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 45985 | 0.68 | 0.619274 |
Target: 5'- cACGUCGACG-CGAucauggacGGCGagaagacggUCACGAUCc -3' miRNA: 3'- -UGCAGCUGCuGCUc-------CCGC---------AGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 47001 | 0.66 | 0.725875 |
Target: 5'- gACGaCcGCGAguuccuCGAGGaCGUCGCGAUCg -3' miRNA: 3'- -UGCaGcUGCU------GCUCCcGCAGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 47387 | 0.7 | 0.46336 |
Target: 5'- uCGUCGACGGCGAgcuccaGGGCGcgACGAc- -3' miRNA: 3'- uGCAGCUGCUGCU------CCCGCagUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 48193 | 0.67 | 0.673041 |
Target: 5'- gGCGaccucaagCGGCGACGGGuGGCGgaaaGCGGUg -3' miRNA: 3'- -UGCa-------GCUGCUGCUC-CCGCag--UGCUAg -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 50020 | 0.68 | 0.597777 |
Target: 5'- uUGUCGcCGAgCG-GGGUGUCcCGGUCg -3' miRNA: 3'- uGCAGCuGCU-GCuCCCGCAGuGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 51415 | 0.69 | 0.555182 |
Target: 5'- cCGUCGAgGccuuCGAGGGCGaCACgcuGAUCu -3' miRNA: 3'- uGCAGCUgCu---GCUCCCGCaGUG---CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 51616 | 0.68 | 0.619274 |
Target: 5'- gACGUCGACGGCGcGGGa---GCuGAUCc -3' miRNA: 3'- -UGCAGCUGCUGCuCCCgcagUG-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 53255 | 0.66 | 0.715444 |
Target: 5'- uCGUCGACGGCGAcgagaucgggccGGGCGacguccUgGCGAc- -3' miRNA: 3'- uGCAGCUGCUGCU------------CCCGC------AgUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 53497 | 0.69 | 0.523825 |
Target: 5'- uACGUCGACGGCGAaGuCGUCguGCGGUa -3' miRNA: 3'- -UGCAGCUGCUGCUcCcGCAG--UGCUAg -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 54257 | 0.68 | 0.597777 |
Target: 5'- cCGUCGGCGAgguUGAGGuaGUCcucguucuggACGAUCu -3' miRNA: 3'- uGCAGCUGCU---GCUCCcgCAG----------UGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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