miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 36252 0.71 0.453635
Target:  5'- -gGUCGACGuccuCGAGugcgccgaGGCGcUCGCGGUCa -3'
miRNA:   3'- ugCAGCUGCu---GCUC--------CCGC-AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 36195 0.67 0.683723
Target:  5'- aGCGuUCGACGGCGA-GGCGgggaaccucUC-CGGUCu -3'
miRNA:   3'- -UGC-AGCUGCUGCUcCCGC---------AGuGCUAG- -5'
16455 5' -56 NC_004084.1 + 33406 0.71 0.414968
Target:  5'- uGCGUCGACGcacgcguACGAGGGCcUCAacAUCg -3'
miRNA:   3'- -UGCAGCUGC-------UGCUCCCGcAGUgcUAG- -5'
16455 5' -56 NC_004084.1 + 32246 0.67 0.640813
Target:  5'- aGCGUCuAC-ACGAGGGCGgacaACgGAUCg -3'
miRNA:   3'- -UGCAGcUGcUGCUCCCGCag--UG-CUAG- -5'
16455 5' -56 NC_004084.1 + 31353 0.68 0.630042
Target:  5'- uCGUCGACGuCGAGcauCG-CGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUCcc-GCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 31202 0.79 0.147838
Target:  5'- cGCGUCGACGucgucgcgaaccuCGAGGuacgcauucaGCGUCGCGAUCg -3'
miRNA:   3'- -UGCAGCUGCu------------GCUCC----------CGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 31111 0.67 0.651576
Target:  5'- uACGUCgccagGAUGAUGAacaGcGGCGcCGCGAUCg -3'
miRNA:   3'- -UGCAG-----CUGCUGCU---C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 29430 0.74 0.281572
Target:  5'- cCGUCGACGGCGAGcuucaccgcgaacgcGGCGUgggCGCGAUg -3'
miRNA:   3'- uGCAGCUGCUGCUC---------------CCGCA---GUGCUAg -5'
16455 5' -56 NC_004084.1 + 29397 0.72 0.363032
Target:  5'- -gGUCgGGCGGCcacuccuGGGGCGUCGCGGUUg -3'
miRNA:   3'- ugCAG-CUGCUGc------UCCCGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 29342 0.68 0.630042
Target:  5'- cGCGgCGACGACGcccccgagcGGGCgGUCGCGGc- -3'
miRNA:   3'- -UGCaGCUGCUGCu--------CCCG-CAGUGCUag -5'
16455 5' -56 NC_004084.1 + 28544 0.68 0.608515
Target:  5'- gACGUCuuuGACGACGAGaucaccGCGUgGaCGAUCa -3'
miRNA:   3'- -UGCAG---CUGCUGCUCc-----CGCAgU-GCUAG- -5'
16455 5' -56 NC_004084.1 + 28281 0.67 0.651576
Target:  5'- gAC-UCGugGACGGGaGUcUCGCGAUCg -3'
miRNA:   3'- -UGcAGCugCUGCUCcCGcAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 23038 0.67 0.640813
Target:  5'- uCGUCGACG-UGAucuuGGCGcacuUCGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUc---CCGC----AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 22805 0.76 0.210884
Target:  5'- aGCGUCGA----GAGGGCGUCACgGAUCg -3'
miRNA:   3'- -UGCAGCUgcugCUCCCGCAGUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 21821 0.67 0.640813
Target:  5'- aGCGUCGACGGUGAGGcGCuggACGAUg -3'
miRNA:   3'- -UGCAGCUGCUGCUCC-CGcagUGCUAg -5'
16455 5' -56 NC_004084.1 + 21776 0.72 0.388871
Target:  5'- gGCGgcaUCGACGuCGGGGcCGUCACcGAUCa -3'
miRNA:   3'- -UGC---AGCUGCuGCUCCcGCAGUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 19924 0.66 0.736216
Target:  5'- uCG-CGACGAuCGAGGGCG--AgGAUCc -3'
miRNA:   3'- uGCaGCUGCU-GCUCCCGCagUgCUAG- -5'
16455 5' -56 NC_004084.1 + 19314 0.68 0.631119
Target:  5'- -gGUCGACGACGAucgacGGGCGacugucucacucaagCGCGAc- -3'
miRNA:   3'- ugCAGCUGCUGCU-----CCCGCa--------------GUGCUag -5'
16455 5' -56 NC_004084.1 + 19131 0.66 0.694358
Target:  5'- uGC-UCGACGAuCGAGuccGCGaCGCGAUCg -3'
miRNA:   3'- -UGcAGCUGCU-GCUCc--CGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 17523 0.66 0.736216
Target:  5'- uCGUCGGauauCGAUGuugaaGGCGUCACGAg- -3'
miRNA:   3'- uGCAGCU----GCUGCuc---CCGCAGUGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.