miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 17173 0.67 0.662322
Target:  5'- gACGUCGAaGGCGAGGGaggCACauuGUCg -3'
miRNA:   3'- -UGCAGCUgCUGCUCCCgcaGUGc--UAG- -5'
16455 5' -56 NC_004084.1 + 41897 0.68 0.587066
Target:  5'- -gGUCcACGACGAccGcGGCG-CGCGAUCg -3'
miRNA:   3'- ugCAGcUGCUGCU--C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 41080 0.68 0.619274
Target:  5'- uACGUCGACGAgaCGAugcGGGCcGUCGCc--- -3'
miRNA:   3'- -UGCAGCUGCU--GCU---CCCG-CAGUGcuag -5'
16455 5' -56 NC_004084.1 + 51616 0.68 0.619274
Target:  5'- gACGUCGACGGCGcGGGa---GCuGAUCc -3'
miRNA:   3'- -UGCAGCUGCUGCuCCCgcagUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 45985 0.68 0.619274
Target:  5'- cACGUCGACG-CGAucauggacGGCGagaagacggUCACGAUCc -3'
miRNA:   3'- -UGCAGCUGCuGCUc-------CCGC---------AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 31353 0.68 0.630042
Target:  5'- uCGUCGACGuCGAGcauCG-CGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUCcc-GCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 19314 0.68 0.631119
Target:  5'- -gGUCGACGACGAucgacGGGCGacugucucacucaagCGCGAc- -3'
miRNA:   3'- ugCAGCUGCUGCU-----CCCGCa--------------GUGCUag -5'
16455 5' -56 NC_004084.1 + 21821 0.67 0.640813
Target:  5'- aGCGUCGACGGUGAGGcGCuggACGAUg -3'
miRNA:   3'- -UGCAGCUGCUGCUCC-CGcagUGCUAg -5'
16455 5' -56 NC_004084.1 + 28281 0.67 0.651576
Target:  5'- gAC-UCGugGACGGGaGUcUCGCGAUCg -3'
miRNA:   3'- -UGcAGCugCUGCUCcCGcAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 51415 0.69 0.555182
Target:  5'- cCGUCGAgGccuuCGAGGGCGaCACgcuGAUCu -3'
miRNA:   3'- uGCAGCUgCu---GCUCCCGCaGUG---CUAG- -5'
16455 5' -56 NC_004084.1 + 9843 0.69 0.544662
Target:  5'- uACGagGuCGGCGAGGGCGgcucaCGCGGg- -3'
miRNA:   3'- -UGCagCuGCUGCUCCCGCa----GUGCUag -5'
16455 5' -56 NC_004084.1 + 53497 0.69 0.523825
Target:  5'- uACGUCGACGGCGAaGuCGUCguGCGGUa -3'
miRNA:   3'- -UGCAGCUGCUGCUcCcGCAG--UGCUAg -5'
16455 5' -56 NC_004084.1 + 31202 0.79 0.147838
Target:  5'- cGCGUCGACGucgucgcgaaccuCGAGGuacgcauucaGCGUCGCGAUCg -3'
miRNA:   3'- -UGCAGCUGCu------------GCUCC----------CGCAGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 7414 0.78 0.161989
Target:  5'- gGCGaUCGACGACGAGGGCGaugCcgACGGUg -3'
miRNA:   3'- -UGC-AGCUGCUGCUCCCGCa--G--UGCUAg -5'
16455 5' -56 NC_004084.1 + 3179 0.73 0.315022
Target:  5'- uCGUCGACGGCGAGGaCGUgaACGAg- -3'
miRNA:   3'- uGCAGCUGCUGCUCCcGCAg-UGCUag -5'
16455 5' -56 NC_004084.1 + 2403 0.71 0.406754
Target:  5'- cCGaCGACGAguCGAGGGCaaaGUaCGCGAUCg -3'
miRNA:   3'- uGCaGCUGCU--GCUCCCG---CA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 10082 0.71 0.444021
Target:  5'- cACGcCGAgGACGAaggGGGCGcgACGAUCa -3'
miRNA:   3'- -UGCaGCUgCUGCU---CCCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 10001 0.7 0.462382
Target:  5'- gACGUCGACGAagaucucCGAGauGGCGgcCACGAUg -3'
miRNA:   3'- -UGCAGCUGCU-------GCUC--CCGCa-GUGCUAg -5'
16455 5' -56 NC_004084.1 + 47387 0.7 0.46336
Target:  5'- uCGUCGACGGCGAgcuccaGGGCGcgACGAc- -3'
miRNA:   3'- uGCAGCUGCUGCU------CCCGCagUGCUag -5'
16455 5' -56 NC_004084.1 + 7475 0.7 0.473193
Target:  5'- aGCGgCGACGGCGAaGGCGagACGAg- -3'
miRNA:   3'- -UGCaGCUGCUGCUcCCGCagUGCUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.