Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16455 | 5' | -56 | NC_004084.1 | + | 33406 | 0.71 | 0.414968 |
Target: 5'- uGCGUCGACGcacgcguACGAGGGCcUCAacAUCg -3' miRNA: 3'- -UGCAGCUGC-------UGCUCCCGcAGUgcUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 21776 | 0.72 | 0.388871 |
Target: 5'- gGCGgcaUCGACGuCGGGGcCGUCACcGAUCa -3' miRNA: 3'- -UGC---AGCUGCuGCUCCcGCAGUG-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 1023 | 0.72 | 0.370658 |
Target: 5'- gACGUCGACGcgauCGGGGGCG-CGCucgaguucgccgaGGUCg -3' miRNA: 3'- -UGCAGCUGCu---GCUCCCGCaGUG-------------CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 29397 | 0.72 | 0.363032 |
Target: 5'- -gGUCgGGCGGCcacuccuGGGGCGUCGCGGUUg -3' miRNA: 3'- ugCAG-CUGCUGc------UCCCGCAGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 29430 | 0.74 | 0.281572 |
Target: 5'- cCGUCGACGGCGAGcuucaccgcgaacgcGGCGUgggCGCGAUg -3' miRNA: 3'- uGCAGCUGCUGCUC---------------CCGCA---GUGCUAg -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 55361 | 0.75 | 0.245974 |
Target: 5'- cCGUCGACGAguuccuCGAGGGUG--GCGAUCa -3' miRNA: 3'- uGCAGCUGCU------GCUCCCGCagUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 22805 | 0.76 | 0.210884 |
Target: 5'- aGCGUCGA----GAGGGCGUCACgGAUCg -3' miRNA: 3'- -UGCAGCUgcugCUCCCGCAGUG-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 54257 | 0.68 | 0.597777 |
Target: 5'- cCGUCGGCGAgguUGAGGuaGUCcucguucuggACGAUCu -3' miRNA: 3'- uGCAGCUGCU---GCUCCcgCAG----------UGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 55253 | 0.68 | 0.597777 |
Target: 5'- cCGUCGACGACGucuacggucGGcGGCGUguaGAUCg -3' miRNA: 3'- uGCAGCUGCUGC---------UC-CCGCAgugCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 16649 | 0.66 | 0.722754 |
Target: 5'- uCGUCGACGucgucCGGGagguccucgucgccGGCGUCGuccCGAUCg -3' miRNA: 3'- uGCAGCUGCu----GCUC--------------CCGCAGU---GCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 19131 | 0.66 | 0.694358 |
Target: 5'- uGC-UCGACGAuCGAGuccGCGaCGCGAUCg -3' miRNA: 3'- -UGcAGCUGCU-GCUCc--CGCaGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 16093 | 0.67 | 0.683723 |
Target: 5'- uCGUCGAucuCGuccCGAcGGuCGUCGCGAUCg -3' miRNA: 3'- uGCAGCU---GCu--GCUcCC-GCAGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 4024 | 0.67 | 0.673041 |
Target: 5'- gGCGUCGAcuggaaCGGCGAucGCGUCAgagUGAUCu -3' miRNA: 3'- -UGCAGCU------GCUGCUccCGCAGU---GCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 6878 | 0.67 | 0.662322 |
Target: 5'- -gGUCGugGAugcCGAGGuaCGUCGgGAUCg -3' miRNA: 3'- ugCAGCugCU---GCUCCc-GCAGUgCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 31111 | 0.67 | 0.651576 |
Target: 5'- uACGUCgccagGAUGAUGAacaGcGGCGcCGCGAUCg -3' miRNA: 3'- -UGCAG-----CUGCUGCU---C-CCGCaGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 32246 | 0.67 | 0.640813 |
Target: 5'- aGCGUCuAC-ACGAGGGCGgacaACgGAUCg -3' miRNA: 3'- -UGCAGcUGcUGCUCCCGCag--UG-CUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 23038 | 0.67 | 0.640813 |
Target: 5'- uCGUCGACG-UGAucuuGGCGcacuUCGCGAUCg -3' miRNA: 3'- uGCAGCUGCuGCUc---CCGC----AGUGCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 29342 | 0.68 | 0.630042 |
Target: 5'- cGCGgCGACGACGcccccgagcGGGCgGUCGCGGc- -3' miRNA: 3'- -UGCaGCUGCUGCu--------CCCG-CAGUGCUag -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 28544 | 0.68 | 0.608515 |
Target: 5'- gACGUCuuuGACGACGAGaucaccGCGUgGaCGAUCa -3' miRNA: 3'- -UGCAG---CUGCUGCUCc-----CGCAgU-GCUAG- -5' |
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16455 | 5' | -56 | NC_004084.1 | + | 16932 | 0.68 | 0.608515 |
Target: 5'- uGCGguUCGGCauCGGcGGGCGUCGCGAcgUCg -3' miRNA: 3'- -UGC--AGCUGcuGCU-CCCGCAGUGCU--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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