miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16455 5' -56 NC_004084.1 + 29342 0.68 0.630042
Target:  5'- cGCGgCGACGACGcccccgagcGGGCgGUCGCGGc- -3'
miRNA:   3'- -UGCaGCUGCUGCu--------CCCG-CAGUGCUag -5'
16455 5' -56 NC_004084.1 + 29430 0.74 0.281572
Target:  5'- cCGUCGACGGCGAGcuucaccgcgaacgcGGCGUgggCGCGAUg -3'
miRNA:   3'- uGCAGCUGCUGCUC---------------CCGCA---GUGCUAg -5'
16455 5' -56 NC_004084.1 + 33406 0.71 0.414968
Target:  5'- uGCGUCGACGcacgcguACGAGGGCcUCAacAUCg -3'
miRNA:   3'- -UGCAGCUGC-------UGCUCCCGcAGUgcUAG- -5'
16455 5' -56 NC_004084.1 + 23038 0.67 0.640813
Target:  5'- uCGUCGACG-UGAucuuGGCGcacuUCGCGAUCg -3'
miRNA:   3'- uGCAGCUGCuGCUc---CCGC----AGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 6260 0.81 0.110675
Target:  5'- uCGUCGACGugGucGGCGUcCAUGAUCa -3'
miRNA:   3'- uGCAGCUGCugCucCCGCA-GUGCUAG- -5'
16455 5' -56 NC_004084.1 + 32246 0.67 0.640813
Target:  5'- aGCGUCuAC-ACGAGGGCGgacaACgGAUCg -3'
miRNA:   3'- -UGCAGcUGcUGCUCCCGCag--UG-CUAG- -5'
16455 5' -56 NC_004084.1 + 31111 0.67 0.651576
Target:  5'- uACGUCgccagGAUGAUGAacaGcGGCGcCGCGAUCg -3'
miRNA:   3'- -UGCAG-----CUGCUGCU---C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 10001 0.7 0.462382
Target:  5'- gACGUCGACGAagaucucCGAGauGGCGgcCACGAUg -3'
miRNA:   3'- -UGCAGCUGCU-------GCUC--CCGCa-GUGCUAg -5'
16455 5' -56 NC_004084.1 + 53255 0.66 0.715444
Target:  5'- uCGUCGACGGCGAcgagaucgggccGGGCGacguccUgGCGAc- -3'
miRNA:   3'- uGCAGCUGCUGCU------------CCCGC------AgUGCUag -5'
16455 5' -56 NC_004084.1 + 43800 0.66 0.715444
Target:  5'- -aGUcCGGCGGCGAGGaGCGcCGgGAg- -3'
miRNA:   3'- ugCA-GCUGCUGCUCC-CGCaGUgCUag -5'
16455 5' -56 NC_004084.1 + 51616 0.68 0.619274
Target:  5'- gACGUCGACGGCGcGGGa---GCuGAUCc -3'
miRNA:   3'- -UGCAGCUGCUGCuCCCgcagUG-CUAG- -5'
16455 5' -56 NC_004084.1 + 41080 0.68 0.619274
Target:  5'- uACGUCGACGAgaCGAugcGGGCcGUCGCc--- -3'
miRNA:   3'- -UGCAGCUGCU--GCU---CCCG-CAGUGcuag -5'
16455 5' -56 NC_004084.1 + 41897 0.68 0.587066
Target:  5'- -gGUCcACGACGAccGcGGCG-CGCGAUCg -3'
miRNA:   3'- ugCAGcUGCUGCU--C-CCGCaGUGCUAG- -5'
16455 5' -56 NC_004084.1 + 51415 0.69 0.555182
Target:  5'- cCGUCGAgGccuuCGAGGGCGaCACgcuGAUCu -3'
miRNA:   3'- uGCAGCUgCu---GCUCCCGCaGUG---CUAG- -5'
16455 5' -56 NC_004084.1 + 10082 0.71 0.444021
Target:  5'- cACGcCGAgGACGAaggGGGCGcgACGAUCa -3'
miRNA:   3'- -UGCaGCUgCUGCU---CCCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 1226 0.67 0.673041
Target:  5'- uCGgCGGCGGgauCGAGGGCGaUCGCGcccAUCu -3'
miRNA:   3'- uGCaGCUGCU---GCUCCCGC-AGUGC---UAG- -5'
16455 5' -56 NC_004084.1 + 48193 0.67 0.673041
Target:  5'- gGCGaccucaagCGGCGACGGGuGGCGgaaaGCGGUg -3'
miRNA:   3'- -UGCa-------GCUGCUGCUC-CCGCag--UGCUAg -5'
16455 5' -56 NC_004084.1 + 36195 0.67 0.683723
Target:  5'- aGCGuUCGACGGCGA-GGCGgggaaccucUC-CGGUCu -3'
miRNA:   3'- -UGC-AGCUGCUGCUcCCGC---------AGuGCUAG- -5'
16455 5' -56 NC_004084.1 + 41609 0.66 0.694358
Target:  5'- uACGUCGAgGACGAacgcGaGGCG--ACGGUCc -3'
miRNA:   3'- -UGCAGCUgCUGCU----C-CCGCagUGCUAG- -5'
16455 5' -56 NC_004084.1 + 16856 0.66 0.698596
Target:  5'- cCGUCGAUGAucgcaagugggaucuCGAGcgcGGCGUCugcucCGAUCg -3'
miRNA:   3'- uGCAGCUGCU---------------GCUC---CCGCAGu----GCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.