miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 3' -53.1 NC_004084.1 + 12588 0.66 0.867828
Target:  5'- aGGuUCGacucccaGGcacCGUGGAUcGGCCAGAGCg -3'
miRNA:   3'- gCC-AGCg------CCu--GCACUUA-CUGGUCUUG- -5'
16456 3' -53.1 NC_004084.1 + 17531 0.66 0.851276
Target:  5'- aGcGUCGCcgcacGGACGUGugguuCCGGAACg -3'
miRNA:   3'- gC-CAGCG-----CCUGCACuuacuGGUCUUG- -5'
16456 3' -53.1 NC_004084.1 + 28273 0.66 0.850423
Target:  5'- gCGGcuucgacUCGUGGACGgGAGUcucgcGAUCGGGGCg -3'
miRNA:   3'- -GCC-------AGCGCCUGCaCUUA-----CUGGUCUUG- -5'
16456 3' -53.1 NC_004084.1 + 35511 0.66 0.842648
Target:  5'- aCGGUCGCGaGugG-GAcauccugcgcGUGAUCgAGGACc -3'
miRNA:   3'- -GCCAGCGC-CugCaCU----------UACUGG-UCUUG- -5'
16456 3' -53.1 NC_004084.1 + 173 0.66 0.833798
Target:  5'- uGGUCGCGauCGUGAagGucCCAGAAg -3'
miRNA:   3'- gCCAGCGCcuGCACUuaCu-GGUCUUg -5'
16456 3' -53.1 NC_004084.1 + 51040 0.67 0.815467
Target:  5'- aGGUCGCaGGCG-GGAUcACCgucGGAGCg -3'
miRNA:   3'- gCCAGCGcCUGCaCUUAcUGG---UCUUG- -5'
16456 3' -53.1 NC_004084.1 + 52291 0.67 0.780571
Target:  5'- uGGUCGCGGAaucgcaucGACCuGAACg -3'
miRNA:   3'- gCCAGCGCCUgcacuua-CUGGuCUUG- -5'
16456 3' -53.1 NC_004084.1 + 29695 0.69 0.681343
Target:  5'- gCGGUCGCGGACGcUGuccUGGCUgAGucGCg -3'
miRNA:   3'- -GCCAGCGCCUGC-ACuu-ACUGG-UCu-UG- -5'
16456 3' -53.1 NC_004084.1 + 49935 0.69 0.670375
Target:  5'- gCGG-CGCaGGugGUcAGUGggGCCAGAACg -3'
miRNA:   3'- -GCCaGCG-CCugCAcUUAC--UGGUCUUG- -5'
16456 3' -53.1 NC_004084.1 + 4309 0.7 0.648341
Target:  5'- cCGGugaUCGCGGGCGUcgucGAGU--CCGGAGCg -3'
miRNA:   3'- -GCC---AGCGCCUGCA----CUUAcuGGUCUUG- -5'
16456 3' -53.1 NC_004084.1 + 4655 0.71 0.560388
Target:  5'- gCGGUC-CGGGCGgggGAAUcggaGACCAGAu- -3'
miRNA:   3'- -GCCAGcGCCUGCa--CUUA----CUGGUCUug -5'
16456 3' -53.1 NC_004084.1 + 42090 1.09 0.001961
Target:  5'- gCGGUCGCGGACGUGAAUGACCAGAACc -3'
miRNA:   3'- -GCCAGCGCCUGCACUUACUGGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.