miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 44041 0.66 0.685562
Target:  5'- cUCGcCGAGuGggaGGUGCGCGAaGaUGCCGCg -3'
miRNA:   3'- -AGCaGCUC-Cg--CUACGUGCU-C-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 28301 0.66 0.685562
Target:  5'- gCGaUCGGGGCGGcgaGUAgUGAGCACCu- -3'
miRNA:   3'- aGC-AGCUCCGCUa--CGU-GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 30030 0.66 0.674895
Target:  5'- cCGaUCGAGGUcu--CGCGGGgGCCGCu -3'
miRNA:   3'- aGC-AGCUCCGcuacGUGCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 11785 0.66 0.666333
Target:  5'- cUCGUCGGGccaccggaagccucuGCGGUGaaaccgguagaggauCGCGAGCuucagcacgacgaucGCCGCg -3'
miRNA:   3'- -AGCAGCUC---------------CGCUAC---------------GUGCUCG---------------UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 14746 0.66 0.664189
Target:  5'- cCGUCGcAGGCacucgGCGCGguaGGC-CCGCc -3'
miRNA:   3'- aGCAGC-UCCGcua--CGUGC---UCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 1537 0.66 0.664189
Target:  5'- gUCGgucuggacCGAGGCGAcgGCcguCGAGCcggagcCCGCg -3'
miRNA:   3'- -AGCa-------GCUCCGCUa-CGu--GCUCGu-----GGCG- -5'
16456 5' -56.9 NC_004084.1 + 29430 0.66 0.664189
Target:  5'- cCGUCGAcGGCGAgcuucacCGCGAaCGCgGCg -3'
miRNA:   3'- aGCAGCU-CCGCUac-----GUGCUcGUGgCG- -5'
16456 5' -56.9 NC_004084.1 + 10382 0.66 0.653455
Target:  5'- -aGUCGAgcaGGCGAUcgaGCGCGAaGaacuCCGCg -3'
miRNA:   3'- agCAGCU---CCGCUA---CGUGCU-Cgu--GGCG- -5'
16456 5' -56.9 NC_004084.1 + 30866 0.66 0.631939
Target:  5'- cCGUCcggGAGGCccuuGUGCGCGGcCACCGg -3'
miRNA:   3'- aGCAG---CUCCGc---UACGUGCUcGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 42133 0.66 0.631939
Target:  5'- cCGUUGAGGUGAcuguUGCA-GGG-ACUGCa -3'
miRNA:   3'- aGCAGCUCCGCU----ACGUgCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42721 0.66 0.631939
Target:  5'- cUGUCGcgucGGCGAguugaucgGCuGCGAGCGCCa- -3'
miRNA:   3'- aGCAGCu---CCGCUa-------CG-UGCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 56554 0.67 0.60398
Target:  5'- -aGUCcagGAGGCGAcgucguccgucgcgcUGCAgGAGCcacACCGUg -3'
miRNA:   3'- agCAG---CUCCGCU---------------ACGUgCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 47572 0.67 0.599688
Target:  5'- cCGuUCGAGGaCGuu-CGCGAGCGCgGUg -3'
miRNA:   3'- aGC-AGCUCC-GCuacGUGCUCGUGgCG- -5'
16456 5' -56.9 NC_004084.1 + 3193 0.67 0.599688
Target:  5'- gUCGguucCGAGaGCGAucUGCGgGuGUACCGUg -3'
miRNA:   3'- -AGCa---GCUC-CGCU--ACGUgCuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 50523 0.67 0.58898
Target:  5'- aCGUCGAGaGCcccGAU-CGCGAGCAgcuUCGCc -3'
miRNA:   3'- aGCAGCUC-CG---CUAcGUGCUCGU---GGCG- -5'
16456 5' -56.9 NC_004084.1 + 5455 0.67 0.58898
Target:  5'- -gGUCaGAGGaGAUGUugACGAGCucccaGCCGCc -3'
miRNA:   3'- agCAG-CUCCgCUACG--UGCUCG-----UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 2172 0.68 0.567674
Target:  5'- aCGUCGAuGCaGUcGCuCGAGCGCCGg -3'
miRNA:   3'- aGCAGCUcCGcUA-CGuGCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 35912 0.68 0.557093
Target:  5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3'
miRNA:   3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5'
16456 5' -56.9 NC_004084.1 + 51415 0.68 0.557093
Target:  5'- cCGUCGAggccuucgagGGCGAcacGCugaucuacguugGCGAGgGCCGCg -3'
miRNA:   3'- aGCAGCU----------CCGCUa--CG------------UGCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 43578 0.68 0.550771
Target:  5'- cCGaCGAGGCGcgGauccuccagugggauCGCGAGUacgGCCGCu -3'
miRNA:   3'- aGCaGCUCCGCuaC---------------GUGCUCG---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.