Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16456 | 5' | -56.9 | NC_004084.1 | + | 42129 | 1.12 | 0.000482 |
Target: 5'- cUCGUCGAGGCGAUGCACGAGCACCGCg -3' miRNA: 3'- -AGCAGCUCCGCUACGUGCUCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 20961 | 0.79 | 0.111371 |
Target: 5'- aCGUCGGGGUcggGAUGCggacucuucGCGAGUGCCGCc -3' miRNA: 3'- aGCAGCUCCG---CUACG---------UGCUCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 42260 | 0.75 | 0.223273 |
Target: 5'- -gGUCGA-GUGAUGCuCGAGCAgCGCg -3' miRNA: 3'- agCAGCUcCGCUACGuGCUCGUgGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 782 | 0.75 | 0.223273 |
Target: 5'- cUCGUCGAGGCGAcGCGCGAccucgagacgaaGCGCg-- -3' miRNA: 3'- -AGCAGCUCCGCUaCGUGCU------------CGUGgcg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 51192 | 0.75 | 0.223273 |
Target: 5'- aUCGUCGAGGuCGGcgcugGCGCGGGCuACUGg -3' miRNA: 3'- -AGCAGCUCC-GCUa----CGUGCUCG-UGGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 5956 | 0.74 | 0.247261 |
Target: 5'- gCGUCcAGGCGAUGUACaacccAGCGCCGg -3' miRNA: 3'- aGCAGcUCCGCUACGUGc----UCGUGGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 32337 | 0.74 | 0.247261 |
Target: 5'- -aG-CGcAGGCGAagaGCACGAGCAuCCGCg -3' miRNA: 3'- agCaGC-UCCGCUa--CGUGCUCGU-GGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 13865 | 0.74 | 0.260037 |
Target: 5'- aUCGUUGAGGCGcugGCACcAGCAgCCGa -3' miRNA: 3'- -AGCAGCUCCGCua-CGUGcUCGU-GGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 21156 | 0.74 | 0.23501 |
Target: 5'- aUUGUCGAGaGCGA-GUccucgACGAGCGCCGg -3' miRNA: 3'- -AGCAGCUC-CGCUaCG-----UGCUCGUGGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 7502 | 0.73 | 0.273346 |
Target: 5'- aCGUCGAGGcCGAuccgcUGCugGGcCAUCGCa -3' miRNA: 3'- aGCAGCUCC-GCU-----ACGugCUcGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 51154 | 0.72 | 0.339989 |
Target: 5'- aCGagGAGGCGAUcgagacggucGC-CGAGCACgCGCc -3' miRNA: 3'- aGCagCUCCGCUA----------CGuGCUCGUG-GCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 9406 | 0.71 | 0.399469 |
Target: 5'- aCGUCGAcGCGcuUGCcgaugACGAGCACgCGCu -3' miRNA: 3'- aGCAGCUcCGCu-ACG-----UGCUCGUG-GCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 31112 | 0.71 | 0.381808 |
Target: 5'- aCGUCGccAGGaUGAUGaacaGCG-GCGCCGCg -3' miRNA: 3'- aGCAGC--UCC-GCUACg---UGCuCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 54398 | 0.71 | 0.399469 |
Target: 5'- aCGaUGAuGGCGAUGCGCGGaaCACCGUc -3' miRNA: 3'- aGCaGCU-CCGCUACGUGCUc-GUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 44947 | 0.71 | 0.380939 |
Target: 5'- uUCGUCGAcgagaacGGCGuucGuCGCGAGUggACCGCa -3' miRNA: 3'- -AGCAGCU-------CCGCua-C-GUGCUCG--UGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 30778 | 0.71 | 0.362991 |
Target: 5'- cUCcUCGAGGCGuacgcgauccaGCGCGAGaCGCUGCu -3' miRNA: 3'- -AGcAGCUCCGCua---------CGUGCUC-GUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 54884 | 0.7 | 0.445826 |
Target: 5'- uUCGaacUCGAGGCGAU---CGGGCAUCGUc -3' miRNA: 3'- -AGC---AGCUCCGCUAcguGCUCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 52677 | 0.7 | 0.425985 |
Target: 5'- gUCGUCGAGGCGAU-CAucccgauCGAGgACCu- -3' miRNA: 3'- -AGCAGCUCCGCUAcGU-------GCUCgUGGcg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 29894 | 0.7 | 0.436313 |
Target: 5'- aCGUCcccggccacgcaGAGGUGAacGUGCGAGC-CCGCg -3' miRNA: 3'- aGCAG------------CUCCGCUa-CGUGCUCGuGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 47386 | 0.69 | 0.495037 |
Target: 5'- gUCGUCGAcGGCGAgcuccaggGCGCGAcGacgaaGCCGa -3' miRNA: 3'- -AGCAGCU-CCGCUa-------CGUGCU-Cg----UGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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