miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 42129 1.12 0.000482
Target:  5'- cUCGUCGAGGCGAUGCACGAGCACCGCg -3'
miRNA:   3'- -AGCAGCUCCGCUACGUGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 20961 0.79 0.111371
Target:  5'- aCGUCGGGGUcggGAUGCggacucuucGCGAGUGCCGCc -3'
miRNA:   3'- aGCAGCUCCG---CUACG---------UGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42260 0.75 0.223273
Target:  5'- -gGUCGA-GUGAUGCuCGAGCAgCGCg -3'
miRNA:   3'- agCAGCUcCGCUACGuGCUCGUgGCG- -5'
16456 5' -56.9 NC_004084.1 + 782 0.75 0.223273
Target:  5'- cUCGUCGAGGCGAcGCGCGAccucgagacgaaGCGCg-- -3'
miRNA:   3'- -AGCAGCUCCGCUaCGUGCU------------CGUGgcg -5'
16456 5' -56.9 NC_004084.1 + 51192 0.75 0.223273
Target:  5'- aUCGUCGAGGuCGGcgcugGCGCGGGCuACUGg -3'
miRNA:   3'- -AGCAGCUCC-GCUa----CGUGCUCG-UGGCg -5'
16456 5' -56.9 NC_004084.1 + 21156 0.74 0.23501
Target:  5'- aUUGUCGAGaGCGA-GUccucgACGAGCGCCGg -3'
miRNA:   3'- -AGCAGCUC-CGCUaCG-----UGCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 5956 0.74 0.247261
Target:  5'- gCGUCcAGGCGAUGUACaacccAGCGCCGg -3'
miRNA:   3'- aGCAGcUCCGCUACGUGc----UCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 32337 0.74 0.247261
Target:  5'- -aG-CGcAGGCGAagaGCACGAGCAuCCGCg -3'
miRNA:   3'- agCaGC-UCCGCUa--CGUGCUCGU-GGCG- -5'
16456 5' -56.9 NC_004084.1 + 13865 0.74 0.260037
Target:  5'- aUCGUUGAGGCGcugGCACcAGCAgCCGa -3'
miRNA:   3'- -AGCAGCUCCGCua-CGUGcUCGU-GGCg -5'
16456 5' -56.9 NC_004084.1 + 7502 0.73 0.273346
Target:  5'- aCGUCGAGGcCGAuccgcUGCugGGcCAUCGCa -3'
miRNA:   3'- aGCAGCUCC-GCU-----ACGugCUcGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 51154 0.72 0.339989
Target:  5'- aCGagGAGGCGAUcgagacggucGC-CGAGCACgCGCc -3'
miRNA:   3'- aGCagCUCCGCUA----------CGuGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 30778 0.71 0.362991
Target:  5'- cUCcUCGAGGCGuacgcgauccaGCGCGAGaCGCUGCu -3'
miRNA:   3'- -AGcAGCUCCGCua---------CGUGCUC-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 44947 0.71 0.380939
Target:  5'- uUCGUCGAcgagaacGGCGuucGuCGCGAGUggACCGCa -3'
miRNA:   3'- -AGCAGCU-------CCGCua-C-GUGCUCG--UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 31112 0.71 0.381808
Target:  5'- aCGUCGccAGGaUGAUGaacaGCG-GCGCCGCg -3'
miRNA:   3'- aGCAGC--UCC-GCUACg---UGCuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 54398 0.71 0.399469
Target:  5'- aCGaUGAuGGCGAUGCGCGGaaCACCGUc -3'
miRNA:   3'- aGCaGCU-CCGCUACGUGCUc-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 9406 0.71 0.399469
Target:  5'- aCGUCGAcGCGcuUGCcgaugACGAGCACgCGCu -3'
miRNA:   3'- aGCAGCUcCGCu-ACG-----UGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 52677 0.7 0.425985
Target:  5'- gUCGUCGAGGCGAU-CAucccgauCGAGgACCu- -3'
miRNA:   3'- -AGCAGCUCCGCUAcGU-------GCUCgUGGcg -5'
16456 5' -56.9 NC_004084.1 + 29894 0.7 0.436313
Target:  5'- aCGUCcccggccacgcaGAGGUGAacGUGCGAGC-CCGCg -3'
miRNA:   3'- aGCAG------------CUCCGCUa-CGUGCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 54884 0.7 0.445826
Target:  5'- uUCGaacUCGAGGCGAU---CGGGCAUCGUc -3'
miRNA:   3'- -AGC---AGCUCCGCUAcguGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 9094 0.69 0.47504
Target:  5'- aCGcCGAccgGGCGAUGUcgACGAGCucaCGCu -3'
miRNA:   3'- aGCaGCU---CCGCUACG--UGCUCGug-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.