miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 34239 0.69 0.47504
Target:  5'- gUCGUCGuAGGUG-UGCGgGAGCGUCGg -3'
miRNA:   3'- -AGCAGC-UCCGCuACGUgCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 28907 0.69 0.479007
Target:  5'- gCGaUCGAGGCug-GCugGAGCcccaagcuggagaacACCGCc -3'
miRNA:   3'- aGC-AGCUCCGcuaCGugCUCG---------------UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42341 0.69 0.484989
Target:  5'- aUCGaCGAGGCGGcgGaacuCGAGCGCCa- -3'
miRNA:   3'- -AGCaGCUCCGCUa-Cgu--GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 686 0.69 0.494028
Target:  5'- uUCGUCGAcguccucGaGCGGUGCAC--GCACUGUg -3'
miRNA:   3'- -AGCAGCU-------C-CGCUACGUGcuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 47386 0.69 0.495037
Target:  5'- gUCGUCGAcGGCGAgcuccaggGCGCGAcGacgaaGCCGa -3'
miRNA:   3'- -AGCAGCU-CCGCUa-------CGUGCU-Cg----UGGCg -5'
16456 5' -56.9 NC_004084.1 + 19493 0.69 0.505178
Target:  5'- -aG-CGAGGCGA-GCAgGAGC-CCGg -3'
miRNA:   3'- agCaGCUCCGCUaCGUgCUCGuGGCg -5'
16456 5' -56.9 NC_004084.1 + 10083 0.68 0.515407
Target:  5'- aCGcCGAGGaCGAaggggGCGCGAcgaucacacuGCACUGCu -3'
miRNA:   3'- aGCaGCUCC-GCUa----CGUGCU----------CGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 23583 0.68 0.515407
Target:  5'- gUCGUCGAGagccagaucGCGAUGgACGcggugAGCACguCGCa -3'
miRNA:   3'- -AGCAGCUC---------CGCUACgUGC-----UCGUG--GCG- -5'
16456 5' -56.9 NC_004084.1 + 42066 0.68 0.515407
Target:  5'- gCGccaGAGGCuGUGCGa-AGCGCCGCg -3'
miRNA:   3'- aGCag-CUCCGcUACGUgcUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 28786 0.68 0.523651
Target:  5'- gUCGUCGAcguccGGagccgacagccaGGUGCcguuguggGCGAGCAUCGCg -3'
miRNA:   3'- -AGCAGCU-----CCg-----------CUACG--------UGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 4532 0.68 0.52572
Target:  5'- gCGUgcAGGCGAUGCA-GGGC-CUGCu -3'
miRNA:   3'- aGCAgcUCCGCUACGUgCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 22841 0.68 0.535067
Target:  5'- cCGcCGAGGCGAacgucguUGUA-GAGCugCGUc -3'
miRNA:   3'- aGCaGCUCCGCU-------ACGUgCUCGugGCG- -5'
16456 5' -56.9 NC_004084.1 + 227 0.68 0.536109
Target:  5'- -aGUCGAccGGCGAgcgaUGCACGcAGC-CgGCg -3'
miRNA:   3'- agCAGCU--CCGCU----ACGUGC-UCGuGgCG- -5'
16456 5' -56.9 NC_004084.1 + 43578 0.68 0.550771
Target:  5'- cCGaCGAGGCGcgGauccuccagugggauCGCGAGUacgGCCGCu -3'
miRNA:   3'- aGCaGCUCCGCuaC---------------GUGCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 51415 0.68 0.557093
Target:  5'- cCGUCGAggccuucgagGGCGAcacGCugaucuacguugGCGAGgGCCGCg -3'
miRNA:   3'- aGCAGCU----------CCGCUa--CG------------UGCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 35912 0.68 0.557093
Target:  5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3'
miRNA:   3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5'
16456 5' -56.9 NC_004084.1 + 2172 0.68 0.567674
Target:  5'- aCGUCGAuGCaGUcGCuCGAGCGCCGg -3'
miRNA:   3'- aGCAGCUcCGcUA-CGuGCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 50523 0.67 0.58898
Target:  5'- aCGUCGAGaGCcccGAU-CGCGAGCAgcuUCGCc -3'
miRNA:   3'- aGCAGCUC-CG---CUAcGUGCUCGU---GGCG- -5'
16456 5' -56.9 NC_004084.1 + 5455 0.67 0.58898
Target:  5'- -gGUCaGAGGaGAUGUugACGAGCucccaGCCGCc -3'
miRNA:   3'- agCAG-CUCCgCUACG--UGCUCG-----UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 47572 0.67 0.599688
Target:  5'- cCGuUCGAGGaCGuu-CGCGAGCGCgGUg -3'
miRNA:   3'- aGC-AGCUCC-GCuacGUGCUCGUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.