miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 227 0.68 0.536109
Target:  5'- -aGUCGAccGGCGAgcgaUGCACGcAGC-CgGCg -3'
miRNA:   3'- agCAGCU--CCGCU----ACGUGC-UCGuGgCG- -5'
16456 5' -56.9 NC_004084.1 + 686 0.69 0.494028
Target:  5'- uUCGUCGAcguccucGaGCGGUGCAC--GCACUGUg -3'
miRNA:   3'- -AGCAGCU-------C-CGCUACGUGcuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 782 0.75 0.223273
Target:  5'- cUCGUCGAGGCGAcGCGCGAccucgagacgaaGCGCg-- -3'
miRNA:   3'- -AGCAGCUCCGCUaCGUGCU------------CGUGgcg -5'
16456 5' -56.9 NC_004084.1 + 1537 0.66 0.664189
Target:  5'- gUCGgucuggacCGAGGCGAcgGCcguCGAGCcggagcCCGCg -3'
miRNA:   3'- -AGCa-------GCUCCGCUa-CGu--GCUCGu-----GGCG- -5'
16456 5' -56.9 NC_004084.1 + 2172 0.68 0.567674
Target:  5'- aCGUCGAuGCaGUcGCuCGAGCGCCGg -3'
miRNA:   3'- aGCAGCUcCGcUA-CGuGCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 3193 0.67 0.599688
Target:  5'- gUCGguucCGAGaGCGAucUGCGgGuGUACCGUg -3'
miRNA:   3'- -AGCa---GCUC-CGCU--ACGUgCuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 4532 0.68 0.52572
Target:  5'- gCGUgcAGGCGAUGCA-GGGC-CUGCu -3'
miRNA:   3'- aGCAgcUCCGCUACGUgCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 5455 0.67 0.58898
Target:  5'- -gGUCaGAGGaGAUGUugACGAGCucccaGCCGCc -3'
miRNA:   3'- agCAG-CUCCgCUACG--UGCUCG-----UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 5956 0.74 0.247261
Target:  5'- gCGUCcAGGCGAUGUACaacccAGCGCCGg -3'
miRNA:   3'- aGCAGcUCCGCUACGUGc----UCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 7502 0.73 0.273346
Target:  5'- aCGUCGAGGcCGAuccgcUGCugGGcCAUCGCa -3'
miRNA:   3'- aGCAGCUCC-GCU-----ACGugCUcGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 9094 0.69 0.47504
Target:  5'- aCGcCGAccgGGCGAUGUcgACGAGCucaCGCu -3'
miRNA:   3'- aGCaGCU---CCGCUACG--UGCUCGug-GCG- -5'
16456 5' -56.9 NC_004084.1 + 9406 0.71 0.399469
Target:  5'- aCGUCGAcGCGcuUGCcgaugACGAGCACgCGCu -3'
miRNA:   3'- aGCAGCUcCGCu-ACG-----UGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 10083 0.68 0.515407
Target:  5'- aCGcCGAGGaCGAaggggGCGCGAcgaucacacuGCACUGCu -3'
miRNA:   3'- aGCaGCUCC-GCUa----CGUGCU----------CGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 10382 0.66 0.653455
Target:  5'- -aGUCGAgcaGGCGAUcgaGCGCGAaGaacuCCGCg -3'
miRNA:   3'- agCAGCU---CCGCUA---CGUGCU-Cgu--GGCG- -5'
16456 5' -56.9 NC_004084.1 + 11785 0.66 0.666333
Target:  5'- cUCGUCGGGccaccggaagccucuGCGGUGaaaccgguagaggauCGCGAGCuucagcacgacgaucGCCGCg -3'
miRNA:   3'- -AGCAGCUC---------------CGCUAC---------------GUGCUCG---------------UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 13865 0.74 0.260037
Target:  5'- aUCGUUGAGGCGcugGCACcAGCAgCCGa -3'
miRNA:   3'- -AGCAGCUCCGCua-CGUGcUCGU-GGCg -5'
16456 5' -56.9 NC_004084.1 + 14746 0.66 0.664189
Target:  5'- cCGUCGcAGGCacucgGCGCGguaGGC-CCGCc -3'
miRNA:   3'- aGCAGC-UCCGcua--CGUGC---UCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 19493 0.69 0.505178
Target:  5'- -aG-CGAGGCGA-GCAgGAGC-CCGg -3'
miRNA:   3'- agCaGCUCCGCUaCGUgCUCGuGGCg -5'
16456 5' -56.9 NC_004084.1 + 20961 0.79 0.111371
Target:  5'- aCGUCGGGGUcggGAUGCggacucuucGCGAGUGCCGCc -3'
miRNA:   3'- aGCAGCUCCG---CUACG---------UGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 21156 0.74 0.23501
Target:  5'- aUUGUCGAGaGCGA-GUccucgACGAGCGCCGg -3'
miRNA:   3'- -AGCAGCUC-CGCUaCG-----UGCUCGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.