miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 22841 0.68 0.535067
Target:  5'- cCGcCGAGGCGAacgucguUGUA-GAGCugCGUc -3'
miRNA:   3'- aGCaGCUCCGCU-------ACGUgCUCGugGCG- -5'
16456 5' -56.9 NC_004084.1 + 23583 0.68 0.515407
Target:  5'- gUCGUCGAGagccagaucGCGAUGgACGcggugAGCACguCGCa -3'
miRNA:   3'- -AGCAGCUC---------CGCUACgUGC-----UCGUG--GCG- -5'
16456 5' -56.9 NC_004084.1 + 28301 0.66 0.685562
Target:  5'- gCGaUCGGGGCGGcgaGUAgUGAGCACCu- -3'
miRNA:   3'- aGC-AGCUCCGCUa--CGU-GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 28786 0.68 0.523651
Target:  5'- gUCGUCGAcguccGGagccgacagccaGGUGCcguuguggGCGAGCAUCGCg -3'
miRNA:   3'- -AGCAGCU-----CCg-----------CUACG--------UGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 28907 0.69 0.479007
Target:  5'- gCGaUCGAGGCug-GCugGAGCcccaagcuggagaacACCGCc -3'
miRNA:   3'- aGC-AGCUCCGcuaCGugCUCG---------------UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 29430 0.66 0.664189
Target:  5'- cCGUCGAcGGCGAgcuucacCGCGAaCGCgGCg -3'
miRNA:   3'- aGCAGCU-CCGCUac-----GUGCUcGUGgCG- -5'
16456 5' -56.9 NC_004084.1 + 29894 0.7 0.436313
Target:  5'- aCGUCcccggccacgcaGAGGUGAacGUGCGAGC-CCGCg -3'
miRNA:   3'- aGCAG------------CUCCGCUa-CGUGCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 30030 0.66 0.674895
Target:  5'- cCGaUCGAGGUcu--CGCGGGgGCCGCu -3'
miRNA:   3'- aGC-AGCUCCGcuacGUGCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 30778 0.71 0.362991
Target:  5'- cUCcUCGAGGCGuacgcgauccaGCGCGAGaCGCUGCu -3'
miRNA:   3'- -AGcAGCUCCGCua---------CGUGCUC-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 30866 0.66 0.631939
Target:  5'- cCGUCcggGAGGCccuuGUGCGCGGcCACCGg -3'
miRNA:   3'- aGCAG---CUCCGc---UACGUGCUcGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 31112 0.71 0.381808
Target:  5'- aCGUCGccAGGaUGAUGaacaGCG-GCGCCGCg -3'
miRNA:   3'- aGCAGC--UCC-GCUACg---UGCuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 32337 0.74 0.247261
Target:  5'- -aG-CGcAGGCGAagaGCACGAGCAuCCGCg -3'
miRNA:   3'- agCaGC-UCCGCUa--CGUGCUCGU-GGCG- -5'
16456 5' -56.9 NC_004084.1 + 34239 0.69 0.47504
Target:  5'- gUCGUCGuAGGUG-UGCGgGAGCGUCGg -3'
miRNA:   3'- -AGCAGC-UCCGCuACGUgCUCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 35912 0.68 0.557093
Target:  5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3'
miRNA:   3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5'
16456 5' -56.9 NC_004084.1 + 42066 0.68 0.515407
Target:  5'- gCGccaGAGGCuGUGCGa-AGCGCCGCg -3'
miRNA:   3'- aGCag-CUCCGcUACGUgcUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42129 1.12 0.000482
Target:  5'- cUCGUCGAGGCGAUGCACGAGCACCGCg -3'
miRNA:   3'- -AGCAGCUCCGCUACGUGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42133 0.66 0.631939
Target:  5'- cCGUUGAGGUGAcuguUGCA-GGG-ACUGCa -3'
miRNA:   3'- aGCAGCUCCGCU----ACGUgCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42260 0.75 0.223273
Target:  5'- -gGUCGA-GUGAUGCuCGAGCAgCGCg -3'
miRNA:   3'- agCAGCUcCGCUACGuGCUCGUgGCG- -5'
16456 5' -56.9 NC_004084.1 + 42341 0.69 0.484989
Target:  5'- aUCGaCGAGGCGGcgGaacuCGAGCGCCa- -3'
miRNA:   3'- -AGCaGCUCCGCUa-Cgu--GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 42721 0.66 0.631939
Target:  5'- cUGUCGcgucGGCGAguugaucgGCuGCGAGCGCCa- -3'
miRNA:   3'- aGCAGCu---CCGCUa-------CG-UGCUCGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.