miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 56554 0.67 0.60398
Target:  5'- -aGUCcagGAGGCGAcgucguccgucgcgcUGCAgGAGCcacACCGUg -3'
miRNA:   3'- agCAG---CUCCGCU---------------ACGUgCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 54884 0.7 0.445826
Target:  5'- uUCGaacUCGAGGCGAU---CGGGCAUCGUc -3'
miRNA:   3'- -AGC---AGCUCCGCUAcguGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 54398 0.71 0.399469
Target:  5'- aCGaUGAuGGCGAUGCGCGGaaCACCGUc -3'
miRNA:   3'- aGCaGCU-CCGCUACGUGCUc-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 52677 0.7 0.425985
Target:  5'- gUCGUCGAGGCGAU-CAucccgauCGAGgACCu- -3'
miRNA:   3'- -AGCAGCUCCGCUAcGU-------GCUCgUGGcg -5'
16456 5' -56.9 NC_004084.1 + 51415 0.68 0.557093
Target:  5'- cCGUCGAggccuucgagGGCGAcacGCugaucuacguugGCGAGgGCCGCg -3'
miRNA:   3'- aGCAGCU----------CCGCUa--CG------------UGCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 51192 0.75 0.223273
Target:  5'- aUCGUCGAGGuCGGcgcugGCGCGGGCuACUGg -3'
miRNA:   3'- -AGCAGCUCC-GCUa----CGUGCUCG-UGGCg -5'
16456 5' -56.9 NC_004084.1 + 51154 0.72 0.339989
Target:  5'- aCGagGAGGCGAUcgagacggucGC-CGAGCACgCGCc -3'
miRNA:   3'- aGCagCUCCGCUA----------CGuGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 50523 0.67 0.58898
Target:  5'- aCGUCGAGaGCcccGAU-CGCGAGCAgcuUCGCc -3'
miRNA:   3'- aGCAGCUC-CG---CUAcGUGCUCGU---GGCG- -5'
16456 5' -56.9 NC_004084.1 + 47572 0.67 0.599688
Target:  5'- cCGuUCGAGGaCGuu-CGCGAGCGCgGUg -3'
miRNA:   3'- aGC-AGCUCC-GCuacGUGCUCGUGgCG- -5'
16456 5' -56.9 NC_004084.1 + 47386 0.69 0.495037
Target:  5'- gUCGUCGAcGGCGAgcuccaggGCGCGAcGacgaaGCCGa -3'
miRNA:   3'- -AGCAGCU-CCGCUa-------CGUGCU-Cg----UGGCg -5'
16456 5' -56.9 NC_004084.1 + 44947 0.71 0.380939
Target:  5'- uUCGUCGAcgagaacGGCGuucGuCGCGAGUggACCGCa -3'
miRNA:   3'- -AGCAGCU-------CCGCua-C-GUGCUCG--UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 44041 0.66 0.685562
Target:  5'- cUCGcCGAGuGggaGGUGCGCGAaGaUGCCGCg -3'
miRNA:   3'- -AGCaGCUC-Cg--CUACGUGCU-C-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 43578 0.68 0.550771
Target:  5'- cCGaCGAGGCGcgGauccuccagugggauCGCGAGUacgGCCGCu -3'
miRNA:   3'- aGCaGCUCCGCuaC---------------GUGCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42721 0.66 0.631939
Target:  5'- cUGUCGcgucGGCGAguugaucgGCuGCGAGCGCCa- -3'
miRNA:   3'- aGCAGCu---CCGCUa-------CG-UGCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 42341 0.69 0.484989
Target:  5'- aUCGaCGAGGCGGcgGaacuCGAGCGCCa- -3'
miRNA:   3'- -AGCaGCUCCGCUa-Cgu--GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 42260 0.75 0.223273
Target:  5'- -gGUCGA-GUGAUGCuCGAGCAgCGCg -3'
miRNA:   3'- agCAGCUcCGCUACGuGCUCGUgGCG- -5'
16456 5' -56.9 NC_004084.1 + 42133 0.66 0.631939
Target:  5'- cCGUUGAGGUGAcuguUGCA-GGG-ACUGCa -3'
miRNA:   3'- aGCAGCUCCGCU----ACGUgCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42129 1.12 0.000482
Target:  5'- cUCGUCGAGGCGAUGCACGAGCACCGCg -3'
miRNA:   3'- -AGCAGCUCCGCUACGUGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42066 0.68 0.515407
Target:  5'- gCGccaGAGGCuGUGCGa-AGCGCCGCg -3'
miRNA:   3'- aGCag-CUCCGcUACGUgcUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 35912 0.68 0.557093
Target:  5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3'
miRNA:   3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.