miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 43578 0.68 0.550771
Target:  5'- cCGaCGAGGCGcgGauccuccagugggauCGCGAGUacgGCCGCu -3'
miRNA:   3'- aGCaGCUCCGCuaC---------------GUGCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42341 0.69 0.484989
Target:  5'- aUCGaCGAGGCGGcgGaacuCGAGCGCCa- -3'
miRNA:   3'- -AGCaGCUCCGCUa-Cgu--GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 47386 0.69 0.495037
Target:  5'- gUCGUCGAcGGCGAgcuccaggGCGCGAcGacgaaGCCGa -3'
miRNA:   3'- -AGCAGCU-CCGCUa-------CGUGCU-Cg----UGGCg -5'
16456 5' -56.9 NC_004084.1 + 19493 0.69 0.505178
Target:  5'- -aG-CGAGGCGA-GCAgGAGC-CCGg -3'
miRNA:   3'- agCaGCUCCGCUaCGUgCUCGuGGCg -5'
16456 5' -56.9 NC_004084.1 + 10083 0.68 0.515407
Target:  5'- aCGcCGAGGaCGAaggggGCGCGAcgaucacacuGCACUGCu -3'
miRNA:   3'- aGCaGCUCC-GCUa----CGUGCU----------CGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 23583 0.68 0.515407
Target:  5'- gUCGUCGAGagccagaucGCGAUGgACGcggugAGCACguCGCa -3'
miRNA:   3'- -AGCAGCUC---------CGCUACgUGC-----UCGUG--GCG- -5'
16456 5' -56.9 NC_004084.1 + 28786 0.68 0.523651
Target:  5'- gUCGUCGAcguccGGagccgacagccaGGUGCcguuguggGCGAGCAUCGCg -3'
miRNA:   3'- -AGCAGCU-----CCg-----------CUACG--------UGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 4532 0.68 0.52572
Target:  5'- gCGUgcAGGCGAUGCA-GGGC-CUGCu -3'
miRNA:   3'- aGCAgcUCCGCUACGUgCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 227 0.68 0.536109
Target:  5'- -aGUCGAccGGCGAgcgaUGCACGcAGC-CgGCg -3'
miRNA:   3'- agCAGCU--CCGCU----ACGUGC-UCGuGgCG- -5'
16456 5' -56.9 NC_004084.1 + 54884 0.7 0.445826
Target:  5'- uUCGaacUCGAGGCGAU---CGGGCAUCGUc -3'
miRNA:   3'- -AGC---AGCUCCGCUAcguGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 29894 0.7 0.436313
Target:  5'- aCGUCcccggccacgcaGAGGUGAacGUGCGAGC-CCGCg -3'
miRNA:   3'- aGCAG------------CUCCGCUa-CGUGCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 52677 0.7 0.425985
Target:  5'- gUCGUCGAGGCGAU-CAucccgauCGAGgACCu- -3'
miRNA:   3'- -AGCAGCUCCGCUAcGU-------GCUCgUGGcg -5'
16456 5' -56.9 NC_004084.1 + 42260 0.75 0.223273
Target:  5'- -gGUCGA-GUGAUGCuCGAGCAgCGCg -3'
miRNA:   3'- agCAGCUcCGCUACGuGCUCGUgGCG- -5'
16456 5' -56.9 NC_004084.1 + 782 0.75 0.223273
Target:  5'- cUCGUCGAGGCGAcGCGCGAccucgagacgaaGCGCg-- -3'
miRNA:   3'- -AGCAGCUCCGCUaCGUGCU------------CGUGgcg -5'
16456 5' -56.9 NC_004084.1 + 51192 0.75 0.223273
Target:  5'- aUCGUCGAGGuCGGcgcugGCGCGGGCuACUGg -3'
miRNA:   3'- -AGCAGCUCC-GCUa----CGUGCUCG-UGGCg -5'
16456 5' -56.9 NC_004084.1 + 5956 0.74 0.247261
Target:  5'- gCGUCcAGGCGAUGUACaacccAGCGCCGg -3'
miRNA:   3'- aGCAGcUCCGCUACGUGc----UCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 32337 0.74 0.247261
Target:  5'- -aG-CGcAGGCGAagaGCACGAGCAuCCGCg -3'
miRNA:   3'- agCaGC-UCCGCUa--CGUGCUCGU-GGCG- -5'
16456 5' -56.9 NC_004084.1 + 51154 0.72 0.339989
Target:  5'- aCGagGAGGCGAUcgagacggucGC-CGAGCACgCGCc -3'
miRNA:   3'- aGCagCUCCGCUA----------CGuGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 30778 0.71 0.362991
Target:  5'- cUCcUCGAGGCGuacgcgauccaGCGCGAGaCGCUGCu -3'
miRNA:   3'- -AGcAGCUCCGCua---------CGUGCUC-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 44947 0.71 0.380939
Target:  5'- uUCGUCGAcgagaacGGCGuucGuCGCGAGUggACCGCa -3'
miRNA:   3'- -AGCAGCU-------CCGCua-C-GUGCUCG--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.