miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16456 5' -56.9 NC_004084.1 + 5956 0.74 0.247261
Target:  5'- gCGUCcAGGCGAUGUACaacccAGCGCCGg -3'
miRNA:   3'- aGCAGcUCCGCUACGUGc----UCGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 32337 0.74 0.247261
Target:  5'- -aG-CGcAGGCGAagaGCACGAGCAuCCGCg -3'
miRNA:   3'- agCaGC-UCCGCUa--CGUGCUCGU-GGCG- -5'
16456 5' -56.9 NC_004084.1 + 51154 0.72 0.339989
Target:  5'- aCGagGAGGCGAUcgagacggucGC-CGAGCACgCGCc -3'
miRNA:   3'- aGCagCUCCGCUA----------CGuGCUCGUG-GCG- -5'
16456 5' -56.9 NC_004084.1 + 30778 0.71 0.362991
Target:  5'- cUCcUCGAGGCGuacgcgauccaGCGCGAGaCGCUGCu -3'
miRNA:   3'- -AGcAGCUCCGCua---------CGUGCUC-GUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42341 0.69 0.484989
Target:  5'- aUCGaCGAGGCGGcgGaacuCGAGCGCCa- -3'
miRNA:   3'- -AGCaGCUCCGCUa-Cgu--GCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 54884 0.7 0.445826
Target:  5'- uUCGaacUCGAGGCGAU---CGGGCAUCGUc -3'
miRNA:   3'- -AGC---AGCUCCGCUAcguGCUCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 29894 0.7 0.436313
Target:  5'- aCGUCcccggccacgcaGAGGUGAacGUGCGAGC-CCGCg -3'
miRNA:   3'- aGCAG------------CUCCGCUa-CGUGCUCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 52677 0.7 0.425985
Target:  5'- gUCGUCGAGGCGAU-CAucccgauCGAGgACCu- -3'
miRNA:   3'- -AGCAGCUCCGCUAcGU-------GCUCgUGGcg -5'
16456 5' -56.9 NC_004084.1 + 44947 0.71 0.380939
Target:  5'- uUCGUCGAcgagaacGGCGuucGuCGCGAGUggACCGCa -3'
miRNA:   3'- -AGCAGCU-------CCGCua-C-GUGCUCG--UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 35912 0.68 0.557093
Target:  5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3'
miRNA:   3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5'
16456 5' -56.9 NC_004084.1 + 5455 0.67 0.58898
Target:  5'- -gGUCaGAGGaGAUGUugACGAGCucccaGCCGCc -3'
miRNA:   3'- agCAG-CUCCgCUACG--UGCUCG-----UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 3193 0.67 0.599688
Target:  5'- gUCGguucCGAGaGCGAucUGCGgGuGUACCGUg -3'
miRNA:   3'- -AGCa---GCUC-CGCU--ACGUgCuCGUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 56554 0.67 0.60398
Target:  5'- -aGUCcagGAGGCGAcgucguccgucgcgcUGCAgGAGCcacACCGUg -3'
miRNA:   3'- agCAG---CUCCGCU---------------ACGUgCUCG---UGGCG- -5'
16456 5' -56.9 NC_004084.1 + 30866 0.66 0.631939
Target:  5'- cCGUCcggGAGGCccuuGUGCGCGGcCACCGg -3'
miRNA:   3'- aGCAG---CUCCGc---UACGUGCUcGUGGCg -5'
16456 5' -56.9 NC_004084.1 + 42133 0.66 0.631939
Target:  5'- cCGUUGAGGUGAcuguUGCA-GGG-ACUGCa -3'
miRNA:   3'- aGCAGCUCCGCU----ACGUgCUCgUGGCG- -5'
16456 5' -56.9 NC_004084.1 + 42721 0.66 0.631939
Target:  5'- cUGUCGcgucGGCGAguugaucgGCuGCGAGCGCCa- -3'
miRNA:   3'- aGCAGCu---CCGCUa-------CG-UGCUCGUGGcg -5'
16456 5' -56.9 NC_004084.1 + 1537 0.66 0.664189
Target:  5'- gUCGgucuggacCGAGGCGAcgGCcguCGAGCcggagcCCGCg -3'
miRNA:   3'- -AGCa-------GCUCCGCUa-CGu--GCUCGu-----GGCG- -5'
16456 5' -56.9 NC_004084.1 + 14746 0.66 0.664189
Target:  5'- cCGUCGcAGGCacucgGCGCGguaGGC-CCGCc -3'
miRNA:   3'- aGCAGC-UCCGcua--CGUGC---UCGuGGCG- -5'
16456 5' -56.9 NC_004084.1 + 29430 0.66 0.664189
Target:  5'- cCGUCGAcGGCGAgcuucacCGCGAaCGCgGCg -3'
miRNA:   3'- aGCAGCU-CCGCUac-----GUGCUcGUGgCG- -5'
16456 5' -56.9 NC_004084.1 + 20961 0.79 0.111371
Target:  5'- aCGUCGGGGUcggGAUGCggacucuucGCGAGUGCCGCc -3'
miRNA:   3'- aGCAGCUCCG---CUACG---------UGCUCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.