Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16456 | 5' | -56.9 | NC_004084.1 | + | 11785 | 0.66 | 0.666333 |
Target: 5'- cUCGUCGGGccaccggaagccucuGCGGUGaaaccgguagaggauCGCGAGCuucagcacgacgaucGCCGCg -3' miRNA: 3'- -AGCAGCUC---------------CGCUAC---------------GUGCUCG---------------UGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 9406 | 0.71 | 0.399469 |
Target: 5'- aCGUCGAcGCGcuUGCcgaugACGAGCACgCGCu -3' miRNA: 3'- aGCAGCUcCGCu-ACG-----UGCUCGUG-GCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 31112 | 0.71 | 0.381808 |
Target: 5'- aCGUCGccAGGaUGAUGaacaGCG-GCGCCGCg -3' miRNA: 3'- aGCAGC--UCC-GCUACg---UGCuCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 20961 | 0.79 | 0.111371 |
Target: 5'- aCGUCGGGGUcggGAUGCggacucuucGCGAGUGCCGCc -3' miRNA: 3'- aGCAGCUCCG---CUACG---------UGCUCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 42721 | 0.66 | 0.631939 |
Target: 5'- cUGUCGcgucGGCGAguugaucgGCuGCGAGCGCCa- -3' miRNA: 3'- aGCAGCu---CCGCUa-------CG-UGCUCGUGGcg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 42133 | 0.66 | 0.631939 |
Target: 5'- cCGUUGAGGUGAcuguUGCA-GGG-ACUGCa -3' miRNA: 3'- aGCAGCUCCGCU----ACGUgCUCgUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 56554 | 0.67 | 0.60398 |
Target: 5'- -aGUCcagGAGGCGAcgucguccgucgcgcUGCAgGAGCcacACCGUg -3' miRNA: 3'- agCAG---CUCCGCU---------------ACGUgCUCG---UGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 3193 | 0.67 | 0.599688 |
Target: 5'- gUCGguucCGAGaGCGAucUGCGgGuGUACCGUg -3' miRNA: 3'- -AGCa---GCUC-CGCU--ACGUgCuCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 22841 | 0.68 | 0.535067 |
Target: 5'- cCGcCGAGGCGAacgucguUGUA-GAGCugCGUc -3' miRNA: 3'- aGCaGCUCCGCU-------ACGUgCUCGugGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 34239 | 0.69 | 0.47504 |
Target: 5'- gUCGUCGuAGGUG-UGCGgGAGCGUCGg -3' miRNA: 3'- -AGCAGC-UCCGCuACGUgCUCGUGGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 686 | 0.69 | 0.494028 |
Target: 5'- uUCGUCGAcguccucGaGCGGUGCAC--GCACUGUg -3' miRNA: 3'- -AGCAGCU-------C-CGCUACGUGcuCGUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 35912 | 0.68 | 0.557093 |
Target: 5'- gUCGUCGAGGaUGAcGCguucACGAGCAuguccCCGg -3' miRNA: 3'- -AGCAGCUCC-GCUaCG----UGCUCGU-----GGCg -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 29430 | 0.66 | 0.664189 |
Target: 5'- cCGUCGAcGGCGAgcuucacCGCGAaCGCgGCg -3' miRNA: 3'- aGCAGCU-CCGCUac-----GUGCUcGUGgCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 28907 | 0.69 | 0.479007 |
Target: 5'- gCGaUCGAGGCug-GCugGAGCcccaagcuggagaacACCGCc -3' miRNA: 3'- aGC-AGCUCCGcuaCGugCUCG---------------UGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 14746 | 0.66 | 0.664189 |
Target: 5'- cCGUCGcAGGCacucgGCGCGguaGGC-CCGCc -3' miRNA: 3'- aGCAGC-UCCGcua--CGUGC---UCGuGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 5455 | 0.67 | 0.58898 |
Target: 5'- -gGUCaGAGGaGAUGUugACGAGCucccaGCCGCc -3' miRNA: 3'- agCAG-CUCCgCUACG--UGCUCG-----UGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 9094 | 0.69 | 0.47504 |
Target: 5'- aCGcCGAccgGGCGAUGUcgACGAGCucaCGCu -3' miRNA: 3'- aGCaGCU---CCGCUACG--UGCUCGug-GCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 54398 | 0.71 | 0.399469 |
Target: 5'- aCGaUGAuGGCGAUGCGCGGaaCACCGUc -3' miRNA: 3'- aGCaGCU-CCGCUACGUGCUc-GUGGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 1537 | 0.66 | 0.664189 |
Target: 5'- gUCGgucuggacCGAGGCGAcgGCcguCGAGCcggagcCCGCg -3' miRNA: 3'- -AGCa-------GCUCCGCUa-CGu--GCUCGu-----GGCG- -5' |
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16456 | 5' | -56.9 | NC_004084.1 | + | 30866 | 0.66 | 0.631939 |
Target: 5'- cCGUCcggGAGGCccuuGUGCGCGGcCACCGg -3' miRNA: 3'- aGCAG---CUCCGc---UACGUGCUcGUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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