miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 40266 0.66 0.909807
Target:  5'- --uUCACGCUCGCGc-UGAuCGAcCCGGa -3'
miRNA:   3'- aguAGUGCGAGUGCuuGCU-GCU-GGUC- -5'
16458 3' -52 NC_004084.1 + 56574 0.66 0.907828
Target:  5'- cCGUCGCGCUgCAgGAgccacaccgugaacGCGGCGucgucGCCGGu -3'
miRNA:   3'- aGUAGUGCGA-GUgCU--------------UGCUGC-----UGGUC- -5'
16458 3' -52 NC_004084.1 + 37317 0.66 0.903113
Target:  5'- cUCAUCgacgacgcugaACGCUUcgGCGAucccgACGACGcCCAGc -3'
miRNA:   3'- -AGUAG-----------UGCGAG--UGCU-----UGCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 43720 0.66 0.903113
Target:  5'- cCAggACGC-CAUcGAUGGCGACCGGu -3'
miRNA:   3'- aGUagUGCGaGUGcUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 49848 0.66 0.903113
Target:  5'- cUCGUCgACG-UCGCGAGCGAgaucCGGCgAGu -3'
miRNA:   3'- -AGUAG-UGCgAGUGCUUGCU----GCUGgUC- -5'
16458 3' -52 NC_004084.1 + 56912 0.66 0.903113
Target:  5'- gCAUCGgcuucgaGCUCGaGGGCGACGucuACCAGg -3'
miRNA:   3'- aGUAGUg------CGAGUgCUUGCUGC---UGGUC- -5'
16458 3' -52 NC_004084.1 + 39144 0.66 0.896144
Target:  5'- gUAUaaaGCUCGCGAggGCGACGACg-- -3'
miRNA:   3'- aGUAgugCGAGUGCU--UGCUGCUGguc -5'
16458 3' -52 NC_004084.1 + 27834 0.66 0.896144
Target:  5'- gCGUC-CGCgaggUCACGGACGAgcugaaggaacaCGACCGa -3'
miRNA:   3'- aGUAGuGCG----AGUGCUUGCU------------GCUGGUc -5'
16458 3' -52 NC_004084.1 + 26287 0.66 0.896144
Target:  5'- -----cCGCUCGCGAGgucUGuCGACCAGa -3'
miRNA:   3'- aguaguGCGAGUGCUU---GCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 13912 0.66 0.896144
Target:  5'- cCAUCAUGCUggucucCACGGAgGACcACCGu -3'
miRNA:   3'- aGUAGUGCGA------GUGCUUgCUGcUGGUc -5'
16458 3' -52 NC_004084.1 + 8222 0.66 0.896144
Target:  5'- uUCAUCACGgUUGCagaGGGCGACGuCgAGa -3'
miRNA:   3'- -AGUAGUGCgAGUG---CUUGCUGCuGgUC- -5'
16458 3' -52 NC_004084.1 + 52148 0.66 0.896144
Target:  5'- gCGUCGUGaUCAUGGACGcCGACCAc -3'
miRNA:   3'- aGUAGUGCgAGUGCUUGCuGCUGGUc -5'
16458 3' -52 NC_004084.1 + 16393 0.66 0.888904
Target:  5'- -uGUCGacCGcCUCGCucGCGACGGCCAc -3'
miRNA:   3'- agUAGU--GC-GAGUGcuUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 47309 0.66 0.881396
Target:  5'- aCAUCcuucgaGC-CGCGAACGGCGAUCu- -3'
miRNA:   3'- aGUAGug----CGaGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 51937 0.66 0.881396
Target:  5'- aCGUU-CGCUCAgcCGGGCGAgGuCCAGg -3'
miRNA:   3'- aGUAGuGCGAGU--GCUUGCUgCuGGUC- -5'
16458 3' -52 NC_004084.1 + 5898 0.66 0.881396
Target:  5'- -gAUCACGCUC-CGGuucUGGaGACCAGg -3'
miRNA:   3'- agUAGUGCGAGuGCUu--GCUgCUGGUC- -5'
16458 3' -52 NC_004084.1 + 28396 0.67 0.876766
Target:  5'- cCAUCuuCGCgUCgauGCGAACGcugacgucgucaccaGCGACCAGg -3'
miRNA:   3'- aGUAGu-GCG-AG---UGCUUGC---------------UGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 27897 0.67 0.873628
Target:  5'- gUCAuUCGCGCUCGCGcAGCucGCgGACCGa -3'
miRNA:   3'- -AGU-AGUGCGAGUGC-UUGc-UG-CUGGUc -5'
16458 3' -52 NC_004084.1 + 30568 0.67 0.873628
Target:  5'- cUCAUCGCgGCg-ACGGuCGGCGaACCGGa -3'
miRNA:   3'- -AGUAGUG-CGagUGCUuGCUGC-UGGUC- -5'
16458 3' -52 NC_004084.1 + 279 0.67 0.872837
Target:  5'- ---cCACaCUCACGGcggcucgACGACGACCGc -3'
miRNA:   3'- aguaGUGcGAGUGCU-------UGCUGCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.