miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 42688 1.1 0.002108
Target:  5'- aUCAUCACGCUCACGAACGACGACCAGa -3'
miRNA:   3'- -AGUAGUGCGAGUGCUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 42084 0.84 0.127524
Target:  5'- cUCGUCGCGgUCGCGGACGugaAUGACCAGa -3'
miRNA:   3'- -AGUAGUGCgAGUGCUUGC---UGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 49151 0.82 0.173201
Target:  5'- aCGUUcgauGCGUUCACGAACGACGACCc- -3'
miRNA:   3'- aGUAG----UGCGAGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 43532 0.79 0.268127
Target:  5'- uUCAUCGCGCUgACGAAgcacggcaccgagacCGGCGGCCGu -3'
miRNA:   3'- -AGUAGUGCGAgUGCUU---------------GCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 49781 0.78 0.279354
Target:  5'- gCAUCGCGaUUACGGAguCGACGGCCAGa -3'
miRNA:   3'- aGUAGUGCgAGUGCUU--GCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 35424 0.76 0.393511
Target:  5'- gUCGUCGaucuCGCUCGCGAG-GuCGACCAGg -3'
miRNA:   3'- -AGUAGU----GCGAGUGCUUgCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 10526 0.73 0.533884
Target:  5'- cUCAUCACcaaCAUGAGCGACGGgCAGg -3'
miRNA:   3'- -AGUAGUGcgaGUGCUUGCUGCUgGUC- -5'
16458 3' -52 NC_004084.1 + 11024 0.73 0.555525
Target:  5'- gUCGUCGCGCcCugGAGCucgccgucGACGACgCGGa -3'
miRNA:   3'- -AGUAGUGCGaGugCUUG--------CUGCUG-GUC- -5'
16458 3' -52 NC_004084.1 + 42293 0.73 0.555525
Target:  5'- -gGUCAccCGUUCACGAucggcgacgaucGCGACGACCGu -3'
miRNA:   3'- agUAGU--GCGAGUGCU------------UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 38899 0.72 0.577415
Target:  5'- cCAUCACGUgaaUgGCGAugacuCGACGACCGa -3'
miRNA:   3'- aGUAGUGCG---AgUGCUu----GCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 18960 0.72 0.577415
Target:  5'- cUCAUCgGCGCUCGCGccaGuCGGCCGGc -3'
miRNA:   3'- -AGUAG-UGCGAGUGCuugCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 11856 0.72 0.599488
Target:  5'- aUAUCGaGUUCACGAccgACGACGAuCCGGa -3'
miRNA:   3'- aGUAGUgCGAGUGCU---UGCUGCU-GGUC- -5'
16458 3' -52 NC_004084.1 + 13347 0.72 0.599488
Target:  5'- uUCAUCGCGC-CACaGAugGGCGAagAGg -3'
miRNA:   3'- -AGUAGUGCGaGUG-CUugCUGCUggUC- -5'
16458 3' -52 NC_004084.1 + 51965 0.72 0.610571
Target:  5'- aCAUCcCGCUC-C--ACGGCGACCAGu -3'
miRNA:   3'- aGUAGuGCGAGuGcuUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 19561 0.71 0.621674
Target:  5'- --cUCugGCUCGacgaGGACGACGucCCAGa -3'
miRNA:   3'- aguAGugCGAGUg---CUUGCUGCu-GGUC- -5'
16458 3' -52 NC_004084.1 + 5421 0.71 0.632786
Target:  5'- cUCGUCAUcgGUgaagaauggaUCGCGAuCGGCGACCAGc -3'
miRNA:   3'- -AGUAGUG--CG----------AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 35352 0.71 0.632786
Target:  5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3'
miRNA:   3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 5461 0.71 0.632786
Target:  5'- gCAcUCGCGacgaUCACGAcgacgcCGACGGCCAGa -3'
miRNA:   3'- aGU-AGUGCg---AGUGCUu-----GCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 51461 0.71 0.654998
Target:  5'- ---cCGCgGCggcugUACGGGCGACGACCGGu -3'
miRNA:   3'- aguaGUG-CGa----GUGCUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 10842 0.71 0.654998
Target:  5'- cCAcCGCGCUCGCGAACGuccuCGAaCGGc -3'
miRNA:   3'- aGUaGUGCGAGUGCUUGCu---GCUgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.