Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16458 | 3' | -52 | NC_004084.1 | + | 18449 | 0.71 | 0.666077 |
Target: 5'- cCGUCACGaaauCGAGCGAUGACCc- -3' miRNA: 3'- aGUAGUGCgaguGCUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20022 | 0.71 | 0.666077 |
Target: 5'- -gAUCgGCGCUCGaGGACGACGAUCGc -3' miRNA: 3'- agUAG-UGCGAGUgCUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 18352 | 0.7 | 0.677123 |
Target: 5'- cCAUCccgACGUUCGCGGgguCGACGGCuCGGa -3' miRNA: 3'- aGUAG---UGCGAGUGCUu--GCUGCUG-GUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 28827 | 0.7 | 0.688127 |
Target: 5'- cCAUCGaacUGCgCGCGAACGACGcCCAc -3' miRNA: 3'- aGUAGU---GCGaGUGCUUGCUGCuGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 21272 | 0.7 | 0.731475 |
Target: 5'- cUCGUCGCGaugaUCACGGA--ACGACCGc -3' miRNA: 3'- -AGUAGUGCg---AGUGCUUgcUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 29935 | 0.7 | 0.731475 |
Target: 5'- gUUGUCcUGCUCACcaGAACGGCGAUCGu -3' miRNA: 3'- -AGUAGuGCGAGUG--CUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20115 | 0.69 | 0.742088 |
Target: 5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3' miRNA: 3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 29212 | 0.69 | 0.752588 |
Target: 5'- gUCGaCGCGCUCugGAAcauCGACG-CCGa -3' miRNA: 3'- -AGUaGUGCGAGugCUU---GCUGCuGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 45986 | 0.69 | 0.752588 |
Target: 5'- aCGUCgACGCgaUCAUGGACGGCGAgaAGa -3' miRNA: 3'- aGUAG-UGCG--AGUGCUUGCUGCUggUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 52929 | 0.69 | 0.752588 |
Target: 5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3' miRNA: 3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 10290 | 0.69 | 0.762963 |
Target: 5'- -----uUGCUCACcguGACGACGACCGGc -3' miRNA: 3'- aguaguGCGAGUGc--UUGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 19144 | 0.69 | 0.762963 |
Target: 5'- -aGUC-CGCgaCGCGAuCGACGACCAc -3' miRNA: 3'- agUAGuGCGa-GUGCUuGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 14661 | 0.69 | 0.773201 |
Target: 5'- -aGUCgAUGCcCGCGAGCGuccCGGCCGGg -3' miRNA: 3'- agUAG-UGCGaGUGCUUGCu--GCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 34957 | 0.69 | 0.773201 |
Target: 5'- cCAUCGCGgUC-CGGGCGAuacUGACCGc -3' miRNA: 3'- aGUAGUGCgAGuGCUUGCU---GCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 47230 | 0.68 | 0.793219 |
Target: 5'- -uGUCGCaGCUgCugGAACGAacgauaCGACCGGc -3' miRNA: 3'- agUAGUG-CGA-GugCUUGCU------GCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 31555 | 0.68 | 0.802977 |
Target: 5'- aCAUCGCGCuaccgacaaUCGuCGAAacugaGACGGCCAu -3' miRNA: 3'- aGUAGUGCG---------AGU-GCUUg----CUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 1663 | 0.68 | 0.812553 |
Target: 5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3' miRNA: 3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 54706 | 0.68 | 0.812553 |
Target: 5'- cUCGUCcauACGCUUcCGGAUGGugUGACCGGg -3' miRNA: 3'- -AGUAG---UGCGAGuGCUUGCU--GCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 17305 | 0.68 | 0.821935 |
Target: 5'- cCAUCACGCaUCAaccuccucuccCGcGGCGACGGCCc- -3' miRNA: 3'- aGUAGUGCG-AGU-----------GC-UUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 43758 | 0.68 | 0.821935 |
Target: 5'- cCGggACGCUCGCGGGCauCGACUGGg -3' miRNA: 3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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