Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 3' | -52 | NC_004084.1 | + | 23698 | 0.67 | 0.865605 |
Target: 5'- cUCAUCGCGa--ACcGGCGACGcCCGGa -3' miRNA: 3'- -AGUAGUGCgagUGcUUGCUGCuGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 36978 | 0.67 | 0.865605 |
Target: 5'- uUCGagGCGCUCGCGGACauccucACGACUc- -3' miRNA: 3'- -AGUagUGCGAGUGCUUGc-----UGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 8571 | 0.67 | 0.865605 |
Target: 5'- -gAUCuCGCUCGCGA-CGuCGACgAGu -3' miRNA: 3'- agUAGuGCGAGUGCUuGCuGCUGgUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 55739 | 0.67 | 0.862326 |
Target: 5'- aUCGUCGCGCguuccuuuaccggCuCGAACGAgcuCGACUGGa -3' miRNA: 3'- -AGUAGUGCGa------------GuGCUUGCU---GCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 35912 | 0.67 | 0.857334 |
Target: 5'- gUCGUCgaggaugacGCGUUCACGAGCauguccccGGCGucGCCGGg -3' miRNA: 3'- -AGUAG---------UGCGAGUGCUUG--------CUGC--UGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 30946 | 0.67 | 0.857334 |
Target: 5'- aCGUCGaGCUCGaGGACGcCGACCGu -3' miRNA: 3'- aGUAGUgCGAGUgCUUGCuGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 34565 | 0.67 | 0.857334 |
Target: 5'- cCAUCGCGagggCGCuGGCGGCGACUg- -3' miRNA: 3'- aGUAGUGCga--GUGcUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 16424 | 0.67 | 0.857334 |
Target: 5'- cCGUCGCGUcaGCGAACG-CuGCCGGa -3' miRNA: 3'- aGUAGUGCGagUGCUUGCuGcUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 26237 | 0.67 | 0.848823 |
Target: 5'- uUCAUCACGUUCGCcaGGGCGuccuCGGCg-- -3' miRNA: 3'- -AGUAGUGCGAGUG--CUUGCu---GCUGguc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 40623 | 0.67 | 0.846224 |
Target: 5'- --cUCGCGUUCACGAcugaagagggcaacGuCGACGuCCAGu -3' miRNA: 3'- aguAGUGCGAGUGCU--------------U-GCUGCuGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 11572 | 0.67 | 0.84008 |
Target: 5'- ----gACGUUCACGGacGCGGCGAUCGu -3' miRNA: 3'- aguagUGCGAGUGCU--UGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 44735 | 0.67 | 0.84008 |
Target: 5'- cUCAUCgACGC-CAUcuACGACGGCCu- -3' miRNA: 3'- -AGUAG-UGCGaGUGcuUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 31949 | 0.68 | 0.834727 |
Target: 5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3' miRNA: 3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 32157 | 0.68 | 0.831114 |
Target: 5'- cCAUCugGgaCACGGGCGAcuucgcgaaCGACCc- -3' miRNA: 3'- aGUAGugCgaGUGCUUGCU---------GCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 56424 | 0.68 | 0.830206 |
Target: 5'- uUCAgCACaGCggcaccgUCGCGAACGACGAUCu- -3' miRNA: 3'- -AGUaGUG-CG-------AGUGCUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 17305 | 0.68 | 0.821935 |
Target: 5'- cCAUCACGCaUCAaccuccucuccCGcGGCGACGGCCc- -3' miRNA: 3'- aGUAGUGCG-AGU-----------GC-UUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 43758 | 0.68 | 0.821935 |
Target: 5'- cCGggACGCUCGCGGGCauCGACUGGg -3' miRNA: 3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 1663 | 0.68 | 0.812553 |
Target: 5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3' miRNA: 3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 54706 | 0.68 | 0.812553 |
Target: 5'- cUCGUCcauACGCUUcCGGAUGGugUGACCGGg -3' miRNA: 3'- -AGUAG---UGCGAGuGCUUGCU--GCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 31555 | 0.68 | 0.802977 |
Target: 5'- aCAUCGCGCuaccgacaaUCGuCGAAacugaGACGGCCAu -3' miRNA: 3'- aGUAGUGCG---------AGU-GCUUg----CUGCUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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