miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 47230 0.68 0.793219
Target:  5'- -uGUCGCaGCUgCugGAACGAacgauaCGACCGGc -3'
miRNA:   3'- agUAGUG-CGA-GugCUUGCU------GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 34957 0.69 0.773201
Target:  5'- cCAUCGCGgUC-CGGGCGAuacUGACCGc -3'
miRNA:   3'- aGUAGUGCgAGuGCUUGCU---GCUGGUc -5'
16458 3' -52 NC_004084.1 + 14661 0.69 0.773201
Target:  5'- -aGUCgAUGCcCGCGAGCGuccCGGCCGGg -3'
miRNA:   3'- agUAG-UGCGaGUGCUUGCu--GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 19144 0.69 0.762963
Target:  5'- -aGUC-CGCgaCGCGAuCGACGACCAc -3'
miRNA:   3'- agUAGuGCGa-GUGCUuGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 10290 0.69 0.762963
Target:  5'- -----uUGCUCACcguGACGACGACCGGc -3'
miRNA:   3'- aguaguGCGAGUGc--UUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 45986 0.69 0.752588
Target:  5'- aCGUCgACGCgaUCAUGGACGGCGAgaAGa -3'
miRNA:   3'- aGUAG-UGCG--AGUGCUUGCUGCUggUC- -5'
16458 3' -52 NC_004084.1 + 29212 0.69 0.752588
Target:  5'- gUCGaCGCGCUCugGAAcauCGACG-CCGa -3'
miRNA:   3'- -AGUaGUGCGAGugCUU---GCUGCuGGUc -5'
16458 3' -52 NC_004084.1 + 52929 0.69 0.752588
Target:  5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3'
miRNA:   3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 20115 0.69 0.742088
Target:  5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3'
miRNA:   3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 29935 0.7 0.731475
Target:  5'- gUUGUCcUGCUCACcaGAACGGCGAUCGu -3'
miRNA:   3'- -AGUAGuGCGAGUG--CUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 21272 0.7 0.731475
Target:  5'- cUCGUCGCGaugaUCACGGA--ACGACCGc -3'
miRNA:   3'- -AGUAGUGCg---AGUGCUUgcUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 28827 0.7 0.688127
Target:  5'- cCAUCGaacUGCgCGCGAACGACGcCCAc -3'
miRNA:   3'- aGUAGU---GCGaGUGCUUGCUGCuGGUc -5'
16458 3' -52 NC_004084.1 + 18352 0.7 0.677123
Target:  5'- cCAUCccgACGUUCGCGGgguCGACGGCuCGGa -3'
miRNA:   3'- aGUAG---UGCGAGUGCUu--GCUGCUG-GUC- -5'
16458 3' -52 NC_004084.1 + 20022 0.71 0.666077
Target:  5'- -gAUCgGCGCUCGaGGACGACGAUCGc -3'
miRNA:   3'- agUAG-UGCGAGUgCUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 18449 0.71 0.666077
Target:  5'- cCGUCACGaaauCGAGCGAUGACCc- -3'
miRNA:   3'- aGUAGUGCgaguGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 51461 0.71 0.654998
Target:  5'- ---cCGCgGCggcugUACGGGCGACGACCGGu -3'
miRNA:   3'- aguaGUG-CGa----GUGCUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 10842 0.71 0.654998
Target:  5'- cCAcCGCGCUCGCGAACGuccuCGAaCGGc -3'
miRNA:   3'- aGUaGUGCGAGUGCUUGCu---GCUgGUC- -5'
16458 3' -52 NC_004084.1 + 35352 0.71 0.632786
Target:  5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3'
miRNA:   3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 5421 0.71 0.632786
Target:  5'- cUCGUCAUcgGUgaagaauggaUCGCGAuCGGCGACCAGc -3'
miRNA:   3'- -AGUAGUG--CG----------AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 5461 0.71 0.632786
Target:  5'- gCAcUCGCGacgaUCACGAcgacgcCGACGGCCAGa -3'
miRNA:   3'- aGU-AGUGCg---AGUGCUu-----GCUGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.