miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 279 0.67 0.872837
Target:  5'- ---cCACaCUCACGGcggcucgACGACGACCGc -3'
miRNA:   3'- aguaGUGcGAGUGCU-------UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 1663 0.68 0.812553
Target:  5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3'
miRNA:   3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5'
16458 3' -52 NC_004084.1 + 5421 0.71 0.632786
Target:  5'- cUCGUCAUcgGUgaagaauggaUCGCGAuCGGCGACCAGc -3'
miRNA:   3'- -AGUAGUG--CG----------AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 5461 0.71 0.632786
Target:  5'- gCAcUCGCGacgaUCACGAcgacgcCGACGGCCAGa -3'
miRNA:   3'- aGU-AGUGCg---AGUGCUu-----GCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 5898 0.66 0.881396
Target:  5'- -gAUCACGCUC-CGGuucUGGaGACCAGg -3'
miRNA:   3'- agUAGUGCGAGuGCUu--GCUgCUGGUC- -5'
16458 3' -52 NC_004084.1 + 8222 0.66 0.896144
Target:  5'- uUCAUCACGgUUGCagaGGGCGACGuCgAGa -3'
miRNA:   3'- -AGUAGUGCgAGUG---CUUGCUGCuGgUC- -5'
16458 3' -52 NC_004084.1 + 8571 0.67 0.865605
Target:  5'- -gAUCuCGCUCGCGA-CGuCGACgAGu -3'
miRNA:   3'- agUAGuGCGAGUGCUuGCuGCUGgUC- -5'
16458 3' -52 NC_004084.1 + 10290 0.69 0.762963
Target:  5'- -----uUGCUCACcguGACGACGACCGGc -3'
miRNA:   3'- aguaguGCGAGUGc--UUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 10526 0.73 0.533884
Target:  5'- cUCAUCACcaaCAUGAGCGACGGgCAGg -3'
miRNA:   3'- -AGUAGUGcgaGUGCUUGCUGCUgGUC- -5'
16458 3' -52 NC_004084.1 + 10842 0.71 0.654998
Target:  5'- cCAcCGCGCUCGCGAACGuccuCGAaCGGc -3'
miRNA:   3'- aGUaGUGCGAGUGCUUGCu---GCUgGUC- -5'
16458 3' -52 NC_004084.1 + 11024 0.73 0.555525
Target:  5'- gUCGUCGCGCcCugGAGCucgccgucGACGACgCGGa -3'
miRNA:   3'- -AGUAGUGCGaGugCUUG--------CUGCUG-GUC- -5'
16458 3' -52 NC_004084.1 + 11572 0.67 0.84008
Target:  5'- ----gACGUUCACGGacGCGGCGAUCGu -3'
miRNA:   3'- aguagUGCGAGUGCU--UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 11856 0.72 0.599488
Target:  5'- aUAUCGaGUUCACGAccgACGACGAuCCGGa -3'
miRNA:   3'- aGUAGUgCGAGUGCU---UGCUGCU-GGUC- -5'
16458 3' -52 NC_004084.1 + 13347 0.72 0.599488
Target:  5'- uUCAUCGCGC-CACaGAugGGCGAagAGg -3'
miRNA:   3'- -AGUAGUGCGaGUG-CUugCUGCUggUC- -5'
16458 3' -52 NC_004084.1 + 13912 0.66 0.896144
Target:  5'- cCAUCAUGCUggucucCACGGAgGACcACCGu -3'
miRNA:   3'- aGUAGUGCGA------GUGCUUgCUGcUGGUc -5'
16458 3' -52 NC_004084.1 + 14661 0.69 0.773201
Target:  5'- -aGUCgAUGCcCGCGAGCGuccCGGCCGGg -3'
miRNA:   3'- agUAG-UGCGaGUGCUUGCu--GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 16393 0.66 0.888904
Target:  5'- -uGUCGacCGcCUCGCucGCGACGGCCAc -3'
miRNA:   3'- agUAGU--GC-GAGUGcuUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 16424 0.67 0.857334
Target:  5'- cCGUCGCGUcaGCGAACG-CuGCCGGa -3'
miRNA:   3'- aGUAGUGCGagUGCUUGCuGcUGGUC- -5'
16458 3' -52 NC_004084.1 + 17305 0.68 0.821935
Target:  5'- cCAUCACGCaUCAaccuccucuccCGcGGCGACGGCCc- -3'
miRNA:   3'- aGUAGUGCG-AGU-----------GC-UUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 18352 0.7 0.677123
Target:  5'- cCAUCccgACGUUCGCGGgguCGACGGCuCGGa -3'
miRNA:   3'- aGUAG---UGCGAGUGCUu--GCUGCUG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.