miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 18449 0.71 0.666077
Target:  5'- cCGUCACGaaauCGAGCGAUGACCc- -3'
miRNA:   3'- aGUAGUGCgaguGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 18960 0.72 0.577415
Target:  5'- cUCAUCgGCGCUCGCGccaGuCGGCCGGc -3'
miRNA:   3'- -AGUAG-UGCGAGUGCuugCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 19144 0.69 0.762963
Target:  5'- -aGUC-CGCgaCGCGAuCGACGACCAc -3'
miRNA:   3'- agUAGuGCGa-GUGCUuGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 19561 0.71 0.621674
Target:  5'- --cUCugGCUCGacgaGGACGACGucCCAGa -3'
miRNA:   3'- aguAGugCGAGUg---CUUGCUGCu-GGUC- -5'
16458 3' -52 NC_004084.1 + 20022 0.71 0.666077
Target:  5'- -gAUCgGCGCUCGaGGACGACGAUCGc -3'
miRNA:   3'- agUAG-UGCGAGUgCUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 20115 0.69 0.742088
Target:  5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3'
miRNA:   3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 21272 0.7 0.731475
Target:  5'- cUCGUCGCGaugaUCACGGA--ACGACCGc -3'
miRNA:   3'- -AGUAGUGCg---AGUGCUUgcUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 23698 0.67 0.865605
Target:  5'- cUCAUCGCGa--ACcGGCGACGcCCGGa -3'
miRNA:   3'- -AGUAGUGCgagUGcUUGCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 26237 0.67 0.848823
Target:  5'- uUCAUCACGUUCGCcaGGGCGuccuCGGCg-- -3'
miRNA:   3'- -AGUAGUGCGAGUG--CUUGCu---GCUGguc -5'
16458 3' -52 NC_004084.1 + 26287 0.66 0.896144
Target:  5'- -----cCGCUCGCGAGgucUGuCGACCAGa -3'
miRNA:   3'- aguaguGCGAGUGCUU---GCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 27834 0.66 0.896144
Target:  5'- gCGUC-CGCgaggUCACGGACGAgcugaaggaacaCGACCGa -3'
miRNA:   3'- aGUAGuGCG----AGUGCUUGCU------------GCUGGUc -5'
16458 3' -52 NC_004084.1 + 27897 0.67 0.873628
Target:  5'- gUCAuUCGCGCUCGCGcAGCucGCgGACCGa -3'
miRNA:   3'- -AGU-AGUGCGAGUGC-UUGc-UG-CUGGUc -5'
16458 3' -52 NC_004084.1 + 28396 0.67 0.876766
Target:  5'- cCAUCuuCGCgUCgauGCGAACGcugacgucgucaccaGCGACCAGg -3'
miRNA:   3'- aGUAGu-GCG-AG---UGCUUGC---------------UGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 28827 0.7 0.688127
Target:  5'- cCAUCGaacUGCgCGCGAACGACGcCCAc -3'
miRNA:   3'- aGUAGU---GCGaGUGCUUGCUGCuGGUc -5'
16458 3' -52 NC_004084.1 + 29212 0.69 0.752588
Target:  5'- gUCGaCGCGCUCugGAAcauCGACG-CCGa -3'
miRNA:   3'- -AGUaGUGCGAGugCUU---GCUGCuGGUc -5'
16458 3' -52 NC_004084.1 + 29935 0.7 0.731475
Target:  5'- gUUGUCcUGCUCACcaGAACGGCGAUCGu -3'
miRNA:   3'- -AGUAGuGCGAGUG--CUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 30568 0.67 0.873628
Target:  5'- cUCAUCGCgGCg-ACGGuCGGCGaACCGGa -3'
miRNA:   3'- -AGUAGUG-CGagUGCUuGCUGC-UGGUC- -5'
16458 3' -52 NC_004084.1 + 30946 0.67 0.857334
Target:  5'- aCGUCGaGCUCGaGGACGcCGACCGu -3'
miRNA:   3'- aGUAGUgCGAGUgCUUGCuGCUGGUc -5'
16458 3' -52 NC_004084.1 + 31555 0.68 0.802977
Target:  5'- aCAUCGCGCuaccgacaaUCGuCGAAacugaGACGGCCAu -3'
miRNA:   3'- aGUAGUGCG---------AGU-GCUUg----CUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 31949 0.68 0.834727
Target:  5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3'
miRNA:   3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.