miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 56912 0.66 0.903113
Target:  5'- gCAUCGgcuucgaGCUCGaGGGCGACGucuACCAGg -3'
miRNA:   3'- aGUAGUg------CGAGUgCUUGCUGC---UGGUC- -5'
16458 3' -52 NC_004084.1 + 56574 0.66 0.907828
Target:  5'- cCGUCGCGCUgCAgGAgccacaccgugaacGCGGCGucgucGCCGGu -3'
miRNA:   3'- aGUAGUGCGA-GUgCU--------------UGCUGC-----UGGUC- -5'
16458 3' -52 NC_004084.1 + 56424 0.68 0.830206
Target:  5'- uUCAgCACaGCggcaccgUCGCGAACGACGAUCu- -3'
miRNA:   3'- -AGUaGUG-CG-------AGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 55739 0.67 0.862326
Target:  5'- aUCGUCGCGCguuccuuuaccggCuCGAACGAgcuCGACUGGa -3'
miRNA:   3'- -AGUAGUGCGa------------GuGCUUGCU---GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 54706 0.68 0.812553
Target:  5'- cUCGUCcauACGCUUcCGGAUGGugUGACCGGg -3'
miRNA:   3'- -AGUAG---UGCGAGuGCUUGCU--GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 52929 0.69 0.752588
Target:  5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3'
miRNA:   3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 52148 0.66 0.896144
Target:  5'- gCGUCGUGaUCAUGGACGcCGACCAc -3'
miRNA:   3'- aGUAGUGCgAGUGCUUGCuGCUGGUc -5'
16458 3' -52 NC_004084.1 + 51965 0.72 0.610571
Target:  5'- aCAUCcCGCUC-C--ACGGCGACCAGu -3'
miRNA:   3'- aGUAGuGCGAGuGcuUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 51937 0.66 0.881396
Target:  5'- aCGUU-CGCUCAgcCGGGCGAgGuCCAGg -3'
miRNA:   3'- aGUAGuGCGAGU--GCUUGCUgCuGGUC- -5'
16458 3' -52 NC_004084.1 + 51461 0.71 0.654998
Target:  5'- ---cCGCgGCggcugUACGGGCGACGACCGGu -3'
miRNA:   3'- aguaGUG-CGa----GUGCUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 49848 0.66 0.903113
Target:  5'- cUCGUCgACG-UCGCGAGCGAgaucCGGCgAGu -3'
miRNA:   3'- -AGUAG-UGCgAGUGCUUGCU----GCUGgUC- -5'
16458 3' -52 NC_004084.1 + 49781 0.78 0.279354
Target:  5'- gCAUCGCGaUUACGGAguCGACGGCCAGa -3'
miRNA:   3'- aGUAGUGCgAGUGCUU--GCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 49151 0.82 0.173201
Target:  5'- aCGUUcgauGCGUUCACGAACGACGACCc- -3'
miRNA:   3'- aGUAG----UGCGAGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 47309 0.66 0.881396
Target:  5'- aCAUCcuucgaGC-CGCGAACGGCGAUCu- -3'
miRNA:   3'- aGUAGug----CGaGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 47230 0.68 0.793219
Target:  5'- -uGUCGCaGCUgCugGAACGAacgauaCGACCGGc -3'
miRNA:   3'- agUAGUG-CGA-GugCUUGCU------GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 45986 0.69 0.752588
Target:  5'- aCGUCgACGCgaUCAUGGACGGCGAgaAGa -3'
miRNA:   3'- aGUAG-UGCG--AGUGCUUGCUGCUggUC- -5'
16458 3' -52 NC_004084.1 + 44735 0.67 0.84008
Target:  5'- cUCAUCgACGC-CAUcuACGACGGCCu- -3'
miRNA:   3'- -AGUAG-UGCGaGUGcuUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 43758 0.68 0.821935
Target:  5'- cCGggACGCUCGCGGGCauCGACUGGg -3'
miRNA:   3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 43720 0.66 0.903113
Target:  5'- cCAggACGC-CAUcGAUGGCGACCGGu -3'
miRNA:   3'- aGUagUGCGaGUGcUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 43532 0.79 0.268127
Target:  5'- uUCAUCGCGCUgACGAAgcacggcaccgagacCGGCGGCCGu -3'
miRNA:   3'- -AGUAGUGCGAgUGCUU---------------GCUGCUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.