Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 3' | -52 | NC_004084.1 | + | 42688 | 1.1 | 0.002108 |
Target: 5'- aUCAUCACGCUCACGAACGACGACCAGa -3' miRNA: 3'- -AGUAGUGCGAGUGCUUGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 42293 | 0.73 | 0.555525 |
Target: 5'- -gGUCAccCGUUCACGAucggcgacgaucGCGACGACCGu -3' miRNA: 3'- agUAGU--GCGAGUGCU------------UGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 42084 | 0.84 | 0.127524 |
Target: 5'- cUCGUCGCGgUCGCGGACGugaAUGACCAGa -3' miRNA: 3'- -AGUAGUGCgAGUGCUUGC---UGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 40623 | 0.67 | 0.846224 |
Target: 5'- --cUCGCGUUCACGAcugaagagggcaacGuCGACGuCCAGu -3' miRNA: 3'- aguAGUGCGAGUGCU--------------U-GCUGCuGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 40266 | 0.66 | 0.909807 |
Target: 5'- --uUCACGCUCGCGc-UGAuCGAcCCGGa -3' miRNA: 3'- aguAGUGCGAGUGCuuGCU-GCU-GGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 39144 | 0.66 | 0.896144 |
Target: 5'- gUAUaaaGCUCGCGAggGCGACGACg-- -3' miRNA: 3'- aGUAgugCGAGUGCU--UGCUGCUGguc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 38899 | 0.72 | 0.577415 |
Target: 5'- cCAUCACGUgaaUgGCGAugacuCGACGACCGa -3' miRNA: 3'- aGUAGUGCG---AgUGCUu----GCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 37317 | 0.66 | 0.903113 |
Target: 5'- cUCAUCgacgacgcugaACGCUUcgGCGAucccgACGACGcCCAGc -3' miRNA: 3'- -AGUAG-----------UGCGAG--UGCU-----UGCUGCuGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 36978 | 0.67 | 0.865605 |
Target: 5'- uUCGagGCGCUCGCGGACauccucACGACUc- -3' miRNA: 3'- -AGUagUGCGAGUGCUUGc-----UGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 35912 | 0.67 | 0.857334 |
Target: 5'- gUCGUCgaggaugacGCGUUCACGAGCauguccccGGCGucGCCGGg -3' miRNA: 3'- -AGUAG---------UGCGAGUGCUUG--------CUGC--UGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 35424 | 0.76 | 0.393511 |
Target: 5'- gUCGUCGaucuCGCUCGCGAG-GuCGACCAGg -3' miRNA: 3'- -AGUAGU----GCGAGUGCUUgCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 35352 | 0.71 | 0.632786 |
Target: 5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3' miRNA: 3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 34957 | 0.69 | 0.773201 |
Target: 5'- cCAUCGCGgUC-CGGGCGAuacUGACCGc -3' miRNA: 3'- aGUAGUGCgAGuGCUUGCU---GCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 34565 | 0.67 | 0.857334 |
Target: 5'- cCAUCGCGagggCGCuGGCGGCGACUg- -3' miRNA: 3'- aGUAGUGCga--GUGcUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 32157 | 0.68 | 0.831114 |
Target: 5'- cCAUCugGgaCACGGGCGAcuucgcgaaCGACCc- -3' miRNA: 3'- aGUAGugCgaGUGCUUGCU---------GCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 31949 | 0.68 | 0.834727 |
Target: 5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3' miRNA: 3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 31555 | 0.68 | 0.802977 |
Target: 5'- aCAUCGCGCuaccgacaaUCGuCGAAacugaGACGGCCAu -3' miRNA: 3'- aGUAGUGCG---------AGU-GCUUg----CUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 30946 | 0.67 | 0.857334 |
Target: 5'- aCGUCGaGCUCGaGGACGcCGACCGu -3' miRNA: 3'- aGUAGUgCGAGUgCUUGCuGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 30568 | 0.67 | 0.873628 |
Target: 5'- cUCAUCGCgGCg-ACGGuCGGCGaACCGGa -3' miRNA: 3'- -AGUAGUG-CGagUGCUuGCUGC-UGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 29935 | 0.7 | 0.731475 |
Target: 5'- gUUGUCcUGCUCACcaGAACGGCGAUCGu -3' miRNA: 3'- -AGUAGuGCGAGUG--CUUGCUGCUGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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