Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 3' | -52 | NC_004084.1 | + | 29212 | 0.69 | 0.752588 |
Target: 5'- gUCGaCGCGCUCugGAAcauCGACG-CCGa -3' miRNA: 3'- -AGUaGUGCGAGugCUU---GCUGCuGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 28827 | 0.7 | 0.688127 |
Target: 5'- cCAUCGaacUGCgCGCGAACGACGcCCAc -3' miRNA: 3'- aGUAGU---GCGaGUGCUUGCUGCuGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 28396 | 0.67 | 0.876766 |
Target: 5'- cCAUCuuCGCgUCgauGCGAACGcugacgucgucaccaGCGACCAGg -3' miRNA: 3'- aGUAGu-GCG-AG---UGCUUGC---------------UGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 27897 | 0.67 | 0.873628 |
Target: 5'- gUCAuUCGCGCUCGCGcAGCucGCgGACCGa -3' miRNA: 3'- -AGU-AGUGCGAGUGC-UUGc-UG-CUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 27834 | 0.66 | 0.896144 |
Target: 5'- gCGUC-CGCgaggUCACGGACGAgcugaaggaacaCGACCGa -3' miRNA: 3'- aGUAGuGCG----AGUGCUUGCU------------GCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 26287 | 0.66 | 0.896144 |
Target: 5'- -----cCGCUCGCGAGgucUGuCGACCAGa -3' miRNA: 3'- aguaguGCGAGUGCUU---GCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 26237 | 0.67 | 0.848823 |
Target: 5'- uUCAUCACGUUCGCcaGGGCGuccuCGGCg-- -3' miRNA: 3'- -AGUAGUGCGAGUG--CUUGCu---GCUGguc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 23698 | 0.67 | 0.865605 |
Target: 5'- cUCAUCGCGa--ACcGGCGACGcCCGGa -3' miRNA: 3'- -AGUAGUGCgagUGcUUGCUGCuGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 21272 | 0.7 | 0.731475 |
Target: 5'- cUCGUCGCGaugaUCACGGA--ACGACCGc -3' miRNA: 3'- -AGUAGUGCg---AGUGCUUgcUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20115 | 0.69 | 0.742088 |
Target: 5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3' miRNA: 3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20022 | 0.71 | 0.666077 |
Target: 5'- -gAUCgGCGCUCGaGGACGACGAUCGc -3' miRNA: 3'- agUAG-UGCGAGUgCUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 19561 | 0.71 | 0.621674 |
Target: 5'- --cUCugGCUCGacgaGGACGACGucCCAGa -3' miRNA: 3'- aguAGugCGAGUg---CUUGCUGCu-GGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 19144 | 0.69 | 0.762963 |
Target: 5'- -aGUC-CGCgaCGCGAuCGACGACCAc -3' miRNA: 3'- agUAGuGCGa-GUGCUuGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 18960 | 0.72 | 0.577415 |
Target: 5'- cUCAUCgGCGCUCGCGccaGuCGGCCGGc -3' miRNA: 3'- -AGUAG-UGCGAGUGCuugCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 18449 | 0.71 | 0.666077 |
Target: 5'- cCGUCACGaaauCGAGCGAUGACCc- -3' miRNA: 3'- aGUAGUGCgaguGCUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 18352 | 0.7 | 0.677123 |
Target: 5'- cCAUCccgACGUUCGCGGgguCGACGGCuCGGa -3' miRNA: 3'- aGUAG---UGCGAGUGCUu--GCUGCUG-GUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 17305 | 0.68 | 0.821935 |
Target: 5'- cCAUCACGCaUCAaccuccucuccCGcGGCGACGGCCc- -3' miRNA: 3'- aGUAGUGCG-AGU-----------GC-UUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 16424 | 0.67 | 0.857334 |
Target: 5'- cCGUCGCGUcaGCGAACG-CuGCCGGa -3' miRNA: 3'- aGUAGUGCGagUGCUUGCuGcUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 16393 | 0.66 | 0.888904 |
Target: 5'- -uGUCGacCGcCUCGCucGCGACGGCCAc -3' miRNA: 3'- agUAGU--GC-GAGUGcuUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 14661 | 0.69 | 0.773201 |
Target: 5'- -aGUCgAUGCcCGCGAGCGuccCGGCCGGg -3' miRNA: 3'- agUAG-UGCGaGUGCUUGCu--GCUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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