Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 3' | -52 | NC_004084.1 | + | 52929 | 0.69 | 0.752588 |
Target: 5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3' miRNA: 3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 5461 | 0.71 | 0.632786 |
Target: 5'- gCAcUCGCGacgaUCACGAcgacgcCGACGGCCAGa -3' miRNA: 3'- aGU-AGUGCg---AGUGCUu-----GCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 5421 | 0.71 | 0.632786 |
Target: 5'- cUCGUCAUcgGUgaagaauggaUCGCGAuCGGCGACCAGc -3' miRNA: 3'- -AGUAGUG--CG----------AGUGCUuGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 35352 | 0.71 | 0.632786 |
Target: 5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3' miRNA: 3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 51461 | 0.71 | 0.654998 |
Target: 5'- ---cCGCgGCggcugUACGGGCGACGACCGGu -3' miRNA: 3'- aguaGUG-CGa----GUGCUUGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20022 | 0.71 | 0.666077 |
Target: 5'- -gAUCgGCGCUCGaGGACGACGAUCGc -3' miRNA: 3'- agUAG-UGCGAGUgCUUGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 18449 | 0.71 | 0.666077 |
Target: 5'- cCGUCACGaaauCGAGCGAUGACCc- -3' miRNA: 3'- aGUAGUGCgaguGCUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 20115 | 0.69 | 0.742088 |
Target: 5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3' miRNA: 3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 45986 | 0.69 | 0.752588 |
Target: 5'- aCGUCgACGCgaUCAUGGACGGCGAgaAGa -3' miRNA: 3'- aGUAG-UGCG--AGUGCUUGCUGCUggUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 19561 | 0.71 | 0.621674 |
Target: 5'- --cUCugGCUCGacgaGGACGACGucCCAGa -3' miRNA: 3'- aguAGugCGAGUg---CUUGCUGCu-GGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 51965 | 0.72 | 0.610571 |
Target: 5'- aCAUCcCGCUC-C--ACGGCGACCAGu -3' miRNA: 3'- aGUAGuGCGAGuGcuUGCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 13347 | 0.72 | 0.599488 |
Target: 5'- uUCAUCGCGC-CACaGAugGGCGAagAGg -3' miRNA: 3'- -AGUAGUGCGaGUG-CUugCUGCUggUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 42084 | 0.84 | 0.127524 |
Target: 5'- cUCGUCGCGgUCGCGGACGugaAUGACCAGa -3' miRNA: 3'- -AGUAGUGCgAGUGCUUGC---UGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 49151 | 0.82 | 0.173201 |
Target: 5'- aCGUUcgauGCGUUCACGAACGACGACCc- -3' miRNA: 3'- aGUAG----UGCGAGUGCUUGCUGCUGGuc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 43532 | 0.79 | 0.268127 |
Target: 5'- uUCAUCGCGCUgACGAAgcacggcaccgagacCGGCGGCCGu -3' miRNA: 3'- -AGUAGUGCGAgUGCUU---------------GCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 49781 | 0.78 | 0.279354 |
Target: 5'- gCAUCGCGaUUACGGAguCGACGGCCAGa -3' miRNA: 3'- aGUAGUGCgAGUGCUU--GCUGCUGGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 10526 | 0.73 | 0.533884 |
Target: 5'- cUCAUCACcaaCAUGAGCGACGGgCAGg -3' miRNA: 3'- -AGUAGUGcgaGUGCUUGCUGCUgGUC- -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 42293 | 0.73 | 0.555525 |
Target: 5'- -gGUCAccCGUUCACGAucggcgacgaucGCGACGACCGu -3' miRNA: 3'- agUAGU--GCGAGUGCU------------UGCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 38899 | 0.72 | 0.577415 |
Target: 5'- cCAUCACGUgaaUgGCGAugacuCGACGACCGa -3' miRNA: 3'- aGUAGUGCG---AgUGCUu----GCUGCUGGUc -5' |
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16458 | 3' | -52 | NC_004084.1 | + | 11856 | 0.72 | 0.599488 |
Target: 5'- aUAUCGaGUUCACGAccgACGACGAuCCGGa -3' miRNA: 3'- aGUAGUgCGAGUGCU---UGCUGCU-GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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