miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 17305 0.68 0.821935
Target:  5'- cCAUCACGCaUCAaccuccucuccCGcGGCGACGGCCc- -3'
miRNA:   3'- aGUAGUGCG-AGU-----------GC-UUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 32157 0.68 0.831114
Target:  5'- cCAUCugGgaCACGGGCGAcuucgcgaaCGACCc- -3'
miRNA:   3'- aGUAGugCgaGUGCUUGCU---------GCUGGuc -5'
16458 3' -52 NC_004084.1 + 43720 0.66 0.903113
Target:  5'- cCAggACGC-CAUcGAUGGCGACCGGu -3'
miRNA:   3'- aGUagUGCGaGUGcUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 5898 0.66 0.881396
Target:  5'- -gAUCACGCUC-CGGuucUGGaGACCAGg -3'
miRNA:   3'- agUAGUGCGAGuGCUu--GCUgCUGGUC- -5'
16458 3' -52 NC_004084.1 + 27897 0.67 0.873628
Target:  5'- gUCAuUCGCGCUCGCGcAGCucGCgGACCGa -3'
miRNA:   3'- -AGU-AGUGCGAGUGC-UUGc-UG-CUGGUc -5'
16458 3' -52 NC_004084.1 + 36978 0.67 0.865605
Target:  5'- uUCGagGCGCUCGCGGACauccucACGACUc- -3'
miRNA:   3'- -AGUagUGCGAGUGCUUGc-----UGCUGGuc -5'
16458 3' -52 NC_004084.1 + 23698 0.67 0.865605
Target:  5'- cUCAUCGCGa--ACcGGCGACGcCCGGa -3'
miRNA:   3'- -AGUAGUGCgagUGcUUGCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 8571 0.67 0.865605
Target:  5'- -gAUCuCGCUCGCGA-CGuCGACgAGu -3'
miRNA:   3'- agUAGuGCGAGUGCUuGCuGCUGgUC- -5'
16458 3' -52 NC_004084.1 + 55739 0.67 0.862326
Target:  5'- aUCGUCGCGCguuccuuuaccggCuCGAACGAgcuCGACUGGa -3'
miRNA:   3'- -AGUAGUGCGa------------GuGCUUGCU---GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 35912 0.67 0.857334
Target:  5'- gUCGUCgaggaugacGCGUUCACGAGCauguccccGGCGucGCCGGg -3'
miRNA:   3'- -AGUAG---------UGCGAGUGCUUG--------CUGC--UGGUC- -5'
16458 3' -52 NC_004084.1 + 34565 0.67 0.857334
Target:  5'- cCAUCGCGagggCGCuGGCGGCGACUg- -3'
miRNA:   3'- aGUAGUGCga--GUGcUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 30946 0.67 0.857334
Target:  5'- aCGUCGaGCUCGaGGACGcCGACCGu -3'
miRNA:   3'- aGUAGUgCGAGUgCUUGCuGCUGGUc -5'
16458 3' -52 NC_004084.1 + 16424 0.67 0.857334
Target:  5'- cCGUCGCGUcaGCGAACG-CuGCCGGa -3'
miRNA:   3'- aGUAGUGCGagUGCUUGCuGcUGGUC- -5'
16458 3' -52 NC_004084.1 + 26237 0.67 0.848823
Target:  5'- uUCAUCACGUUCGCcaGGGCGuccuCGGCg-- -3'
miRNA:   3'- -AGUAGUGCGAGUG--CUUGCu---GCUGguc -5'
16458 3' -52 NC_004084.1 + 56574 0.66 0.907828
Target:  5'- cCGUCGCGCUgCAgGAgccacaccgugaacGCGGCGucgucGCCGGu -3'
miRNA:   3'- aGUAGUGCGA-GUgCU--------------UGCUGC-----UGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.