miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 11024 0.73 0.555525
Target:  5'- gUCGUCGCGCcCugGAGCucgccgucGACGACgCGGa -3'
miRNA:   3'- -AGUAGUGCGaGugCUUG--------CUGCUG-GUC- -5'
16458 3' -52 NC_004084.1 + 34957 0.69 0.773201
Target:  5'- cCAUCGCGgUC-CGGGCGAuacUGACCGc -3'
miRNA:   3'- aGUAGUGCgAGuGCUUGCU---GCUGGUc -5'
16458 3' -52 NC_004084.1 + 5898 0.66 0.881396
Target:  5'- -gAUCACGCUC-CGGuucUGGaGACCAGg -3'
miRNA:   3'- agUAGUGCGAGuGCUu--GCUgCUGGUC- -5'
16458 3' -52 NC_004084.1 + 28827 0.7 0.688127
Target:  5'- cCAUCGaacUGCgCGCGAACGACGcCCAc -3'
miRNA:   3'- aGUAGU---GCGaGUGCUUGCUGCuGGUc -5'
16458 3' -52 NC_004084.1 + 35424 0.76 0.393511
Target:  5'- gUCGUCGaucuCGCUCGCGAG-GuCGACCAGg -3'
miRNA:   3'- -AGUAGU----GCGAGUGCUUgCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 18960 0.72 0.577415
Target:  5'- cUCAUCgGCGCUCGCGccaGuCGGCCGGc -3'
miRNA:   3'- -AGUAG-UGCGAGUGCuugCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 43720 0.66 0.903113
Target:  5'- cCAggACGC-CAUcGAUGGCGACCGGu -3'
miRNA:   3'- aGUagUGCGaGUGcUUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 56574 0.66 0.907828
Target:  5'- cCGUCGCGCUgCAgGAgccacaccgugaacGCGGCGucgucGCCGGu -3'
miRNA:   3'- aGUAGUGCGA-GUgCU--------------UGCUGC-----UGGUC- -5'
16458 3' -52 NC_004084.1 + 14661 0.69 0.773201
Target:  5'- -aGUCgAUGCcCGCGAGCGuccCGGCCGGg -3'
miRNA:   3'- agUAG-UGCGaGUGCUUGCu--GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 42293 0.73 0.555525
Target:  5'- -gGUCAccCGUUCACGAucggcgacgaucGCGACGACCGu -3'
miRNA:   3'- agUAGU--GCGAGUGCU------------UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 40623 0.67 0.846224
Target:  5'- --cUCGCGUUCACGAcugaagagggcaacGuCGACGuCCAGu -3'
miRNA:   3'- aguAGUGCGAGUGCU--------------U-GCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 35352 0.71 0.632786
Target:  5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3'
miRNA:   3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 5421 0.71 0.632786
Target:  5'- cUCGUCAUcgGUgaagaauggaUCGCGAuCGGCGACCAGc -3'
miRNA:   3'- -AGUAGUG--CG----------AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 5461 0.71 0.632786
Target:  5'- gCAcUCGCGacgaUCACGAcgacgcCGACGGCCAGa -3'
miRNA:   3'- aGU-AGUGCg---AGUGCUu-----GCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 1663 0.68 0.812553
Target:  5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3'
miRNA:   3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5'
16458 3' -52 NC_004084.1 + 43758 0.68 0.821935
Target:  5'- cCGggACGCUCGCGGGCauCGACUGGg -3'
miRNA:   3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 56424 0.68 0.830206
Target:  5'- uUCAgCACaGCggcaccgUCGCGAACGACGAUCu- -3'
miRNA:   3'- -AGUaGUG-CG-------AGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 31949 0.68 0.834727
Target:  5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3'
miRNA:   3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5'
16458 3' -52 NC_004084.1 + 11572 0.67 0.84008
Target:  5'- ----gACGUUCACGGacGCGGCGAUCGu -3'
miRNA:   3'- aguagUGCGAGUGCU--UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 44735 0.67 0.84008
Target:  5'- cUCAUCgACGC-CAUcuACGACGGCCu- -3'
miRNA:   3'- -AGUAG-UGCGaGUGcuUGCUGCUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.