miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 49151 0.82 0.173201
Target:  5'- aCGUUcgauGCGUUCACGAACGACGACCc- -3'
miRNA:   3'- aGUAG----UGCGAGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 56912 0.66 0.903113
Target:  5'- gCAUCGgcuucgaGCUCGaGGGCGACGucuACCAGg -3'
miRNA:   3'- aGUAGUg------CGAGUgCUUGCUGC---UGGUC- -5'
16458 3' -52 NC_004084.1 + 37317 0.66 0.903113
Target:  5'- cUCAUCgacgacgcugaACGCUUcgGCGAucccgACGACGcCCAGc -3'
miRNA:   3'- -AGUAG-----------UGCGAG--UGCU-----UGCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 52148 0.66 0.896144
Target:  5'- gCGUCGUGaUCAUGGACGcCGACCAc -3'
miRNA:   3'- aGUAGUGCgAGUGCUUGCuGCUGGUc -5'
16458 3' -52 NC_004084.1 + 47230 0.68 0.793219
Target:  5'- -uGUCGCaGCUgCugGAACGAacgauaCGACCGGc -3'
miRNA:   3'- agUAGUG-CGA-GugCUUGCU------GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 1663 0.68 0.812553
Target:  5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3'
miRNA:   3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5'
16458 3' -52 NC_004084.1 + 43758 0.68 0.821935
Target:  5'- cCGggACGCUCGCGGGCauCGACUGGg -3'
miRNA:   3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 56424 0.68 0.830206
Target:  5'- uUCAgCACaGCggcaccgUCGCGAACGACGAUCu- -3'
miRNA:   3'- -AGUaGUG-CG-------AGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 31949 0.68 0.834727
Target:  5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3'
miRNA:   3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5'
16458 3' -52 NC_004084.1 + 11572 0.67 0.84008
Target:  5'- ----gACGUUCACGGacGCGGCGAUCGu -3'
miRNA:   3'- aguagUGCGAGUGCU--UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 44735 0.67 0.84008
Target:  5'- cUCAUCgACGC-CAUcuACGACGGCCu- -3'
miRNA:   3'- -AGUAG-UGCGaGUGcuUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 40623 0.67 0.846224
Target:  5'- --cUCGCGUUCACGAcugaagagggcaacGuCGACGuCCAGu -3'
miRNA:   3'- aguAGUGCGAGUGCU--------------U-GCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 52929 0.69 0.752588
Target:  5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3'
miRNA:   3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 45986 0.69 0.752588
Target:  5'- aCGUCgACGCgaUCAUGGACGGCGAgaAGa -3'
miRNA:   3'- aGUAG-UGCG--AGUGCUUGCUGCUggUC- -5'
16458 3' -52 NC_004084.1 + 20115 0.69 0.742088
Target:  5'- aCGUCACGCUCGuCGAcggaACGuCGGUCGGa -3'
miRNA:   3'- aGUAGUGCGAGU-GCU----UGCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 35352 0.71 0.632786
Target:  5'- cUCGUCGCG-UCGCcGGCGACGAUCGc -3'
miRNA:   3'- -AGUAGUGCgAGUGcUUGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 13912 0.66 0.896144
Target:  5'- cCAUCAUGCUggucucCACGGAgGACcACCGu -3'
miRNA:   3'- aGUAGUGCGA------GUGCUUgCUGcUGGUc -5'
16458 3' -52 NC_004084.1 + 26287 0.66 0.896144
Target:  5'- -----cCGCUCGCGAGgucUGuCGACCAGa -3'
miRNA:   3'- aguaguGCGAGUGCUU---GCuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 27834 0.66 0.896144
Target:  5'- gCGUC-CGCgaggUCACGGACGAgcugaaggaacaCGACCGa -3'
miRNA:   3'- aGUAGuGCG----AGUGCUUGCU------------GCUGGUc -5'
16458 3' -52 NC_004084.1 + 39144 0.66 0.896144
Target:  5'- gUAUaaaGCUCGCGAggGCGACGACg-- -3'
miRNA:   3'- aGUAgugCGAGUGCU--UGCUGCUGguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.