miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 3' -52 NC_004084.1 + 51937 0.66 0.881396
Target:  5'- aCGUU-CGCUCAgcCGGGCGAgGuCCAGg -3'
miRNA:   3'- aGUAGuGCGAGU--GCUUGCUgCuGGUC- -5'
16458 3' -52 NC_004084.1 + 47309 0.66 0.881396
Target:  5'- aCAUCcuucgaGC-CGCGAACGGCGAUCu- -3'
miRNA:   3'- aGUAGug----CGaGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 28396 0.67 0.876766
Target:  5'- cCAUCuuCGCgUCgauGCGAACGcugacgucgucaccaGCGACCAGg -3'
miRNA:   3'- aGUAGu-GCG-AG---UGCUUGC---------------UGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 30568 0.67 0.873628
Target:  5'- cUCAUCGCgGCg-ACGGuCGGCGaACCGGa -3'
miRNA:   3'- -AGUAGUG-CGagUGCUuGCUGC-UGGUC- -5'
16458 3' -52 NC_004084.1 + 279 0.67 0.872837
Target:  5'- ---cCACaCUCACGGcggcucgACGACGACCGc -3'
miRNA:   3'- aguaGUGcGAGUGCU-------UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 40623 0.67 0.846224
Target:  5'- --cUCGCGUUCACGAcugaagagggcaacGuCGACGuCCAGu -3'
miRNA:   3'- aguAGUGCGAGUGCU--------------U-GCUGCuGGUC- -5'
16458 3' -52 NC_004084.1 + 11572 0.67 0.84008
Target:  5'- ----gACGUUCACGGacGCGGCGAUCGu -3'
miRNA:   3'- aguagUGCGAGUGCU--UGCUGCUGGUc -5'
16458 3' -52 NC_004084.1 + 31949 0.68 0.834727
Target:  5'- aCGUCGCcggcgcgcucaaccaGCUCGgGAACGACGuCCu- -3'
miRNA:   3'- aGUAGUG---------------CGAGUgCUUGCUGCuGGuc -5'
16458 3' -52 NC_004084.1 + 56424 0.68 0.830206
Target:  5'- uUCAgCACaGCggcaccgUCGCGAACGACGAUCu- -3'
miRNA:   3'- -AGUaGUG-CG-------AGUGCUUGCUGCUGGuc -5'
16458 3' -52 NC_004084.1 + 43758 0.68 0.821935
Target:  5'- cCGggACGCUCGCGGGCauCGACUGGg -3'
miRNA:   3'- aGUagUGCGAGUGCUUGcuGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 1663 0.68 0.812553
Target:  5'- gUCAUCAUggGCUCGuCGGGCGACcuGAUCGa -3'
miRNA:   3'- -AGUAGUG--CGAGU-GCUUGCUG--CUGGUc -5'
16458 3' -52 NC_004084.1 + 47230 0.68 0.793219
Target:  5'- -uGUCGCaGCUgCugGAACGAacgauaCGACCGGc -3'
miRNA:   3'- agUAGUG-CGA-GugCUUGCU------GCUGGUC- -5'
16458 3' -52 NC_004084.1 + 10290 0.69 0.762963
Target:  5'- -----uUGCUCACcguGACGACGACCGGc -3'
miRNA:   3'- aguaguGCGAGUGc--UUGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 52929 0.69 0.752588
Target:  5'- gCAUacgccgaGCGCgUCACGAcCGGCGGCUGGg -3'
miRNA:   3'- aGUAg------UGCG-AGUGCUuGCUGCUGGUC- -5'
16458 3' -52 NC_004084.1 + 42688 1.1 0.002108
Target:  5'- aUCAUCACGCUCACGAACGACGACCAGa -3'
miRNA:   3'- -AGUAGUGCGAGUGCUUGCUGCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.