miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 5' -58.2 NC_004084.1 + 21581 0.66 0.606125
Target:  5'- -uUCGUCACCGAUgcaaccgGCGAGCAGcUGGa -3'
miRNA:   3'- guGGCAGUGGCUAg------CGCUCGUCcGCU- -5'
16458 5' -58.2 NC_004084.1 + 29770 0.66 0.606125
Target:  5'- gACCGUC-CUGcAUCGCGA-CGGGuCGGc -3'
miRNA:   3'- gUGGCAGuGGC-UAGCGCUcGUCC-GCU- -5'
16458 5' -58.2 NC_004084.1 + 47960 0.66 0.606125
Target:  5'- gGCCGUCcUgGAUCGCcucGCGGGCu- -3'
miRNA:   3'- gUGGCAGuGgCUAGCGcu-CGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 31282 0.66 0.606125
Target:  5'- --aCGUgGCCGGUCGCGGGUcccuaucguugGGGUa- -3'
miRNA:   3'- gugGCAgUGGCUAGCGCUCG-----------UCCGcu -5'
16458 5' -58.2 NC_004084.1 + 13607 0.66 0.595467
Target:  5'- aUACCGUCACCGA-C-CGGGUGGuCGGg -3'
miRNA:   3'- -GUGGCAGUGGCUaGcGCUCGUCcGCU- -5'
16458 5' -58.2 NC_004084.1 + 35710 0.66 0.584838
Target:  5'- aGCCG-CACuCGAgguucucagggCGCGAGguGGCa- -3'
miRNA:   3'- gUGGCaGUG-GCUa----------GCGCUCguCCGcu -5'
16458 5' -58.2 NC_004084.1 + 41907 0.66 0.584838
Target:  5'- gACCGcggCGCgCGAUCGCcuGCuguGGCGAu -3'
miRNA:   3'- gUGGCa--GUG-GCUAGCGcuCGu--CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 27700 0.66 0.581656
Target:  5'- aCAgCGUCACgCGA-CGCuguucccgggugagGAGcCAGGCGAg -3'
miRNA:   3'- -GUgGCAGUG-GCUaGCG--------------CUC-GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 39286 0.66 0.573189
Target:  5'- --gCGUCGCggacuCGAUCGuCGAGCaccgagaGGGCGAg -3'
miRNA:   3'- gugGCAGUG-----GCUAGC-GCUCG-------UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 34722 0.66 0.563699
Target:  5'- gGgCGUCGCCGGuUCGCGAugaGCucGCGGa -3'
miRNA:   3'- gUgGCAGUGGCU-AGCGCU---CGucCGCU- -5'
16458 5' -58.2 NC_004084.1 + 29565 0.66 0.563699
Target:  5'- gGCCGUUgaggGCC-AUCGcCGGGUGGGCGu -3'
miRNA:   3'- gUGGCAG----UGGcUAGC-GCUCGUCCGCu -5'
16458 5' -58.2 NC_004084.1 + 7391 0.67 0.542768
Target:  5'- gACCG-CAUCGAcgaGCuGAGCAaGGCGAu -3'
miRNA:   3'- gUGGCaGUGGCUag-CG-CUCGU-CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 48159 0.67 0.532398
Target:  5'- aCAUCGUgauccggaCGCCGAcCGCGAcucacCAGGCGAc -3'
miRNA:   3'- -GUGGCA--------GUGGCUaGCGCUc----GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 16919 0.67 0.532398
Target:  5'- gAUCGUgGCCGggUGCGguucggcaucGGCGGGCGu -3'
miRNA:   3'- gUGGCAgUGGCuaGCGC----------UCGUCCGCu -5'
16458 5' -58.2 NC_004084.1 + 56609 0.67 0.532398
Target:  5'- -gUCGUCGCCGGUCGgCGAGUucGCc- -3'
miRNA:   3'- guGGCAGUGGCUAGC-GCUCGucCGcu -5'
16458 5' -58.2 NC_004084.1 + 23066 0.67 0.5221
Target:  5'- gAUCGUCGCCGGcgaCGCGAcgAGGUGGa -3'
miRNA:   3'- gUGGCAGUGGCUa--GCGCUcgUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 23420 0.67 0.5221
Target:  5'- aGCCca-GCUGAUCGCuGAcacGCAGGCGGc -3'
miRNA:   3'- gUGGcagUGGCUAGCG-CU---CGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 51175 0.67 0.521074
Target:  5'- uCGCCGagcacgCGCCGAUCGuCGAggucggcgcuggcGCGGGCu- -3'
miRNA:   3'- -GUGGCa-----GUGGCUAGC-GCU-------------CGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 53226 0.67 0.501744
Target:  5'- gCACCGUCGugUC-AUCuaCGAGCGGGCGGu -3'
miRNA:   3'- -GUGGCAGU--GGcUAGc-GCUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 35950 0.67 0.501744
Target:  5'- aGCCGcCACCacgcagccGUCGCGAGCGcccccgaagacGGCGGu -3'
miRNA:   3'- gUGGCaGUGGc-------UAGCGCUCGU-----------CCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.