Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 5' | -58.2 | NC_004084.1 | + | 38370 | 0.68 | 0.462137 |
Target: 5'- aCGCCGg-AUCGAgCGCGGGaAGGCGAc -3' miRNA: 3'- -GUGGCagUGGCUaGCGCUCgUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 48871 | 0.68 | 0.462137 |
Target: 5'- --aCGUC-CCGGggcUCGCGAcgaugcacgacgGCAGGCGAu -3' miRNA: 3'- gugGCAGuGGCU---AGCGCU------------CGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 4520 | 0.68 | 0.442959 |
Target: 5'- uCGCC-UCGCag--CGCGuGCAGGCGAu -3' miRNA: 3'- -GUGGcAGUGgcuaGCGCuCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 41676 | 0.68 | 0.471889 |
Target: 5'- --aCGUCAUCGAggcCGCGAuGCAgaccGGCGAg -3' miRNA: 3'- gugGCAGUGGCUa--GCGCU-CGU----CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 9095 | 0.68 | 0.471889 |
Target: 5'- uCGCCGaUAUCGAgaguaGCGAGCAGGUc- -3' miRNA: 3'- -GUGGCaGUGGCUag---CGCUCGUCCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 56609 | 0.67 | 0.532398 |
Target: 5'- -gUCGUCGCCGGUCGgCGAGUucGCc- -3' miRNA: 3'- guGGCAGUGGCUAGC-GCUCGucCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 22815 | 0.67 | 0.500735 |
Target: 5'- gGgCGUCACgGAUCGauccguuCGAGCcgccgAGGCGAa -3' miRNA: 3'- gUgGCAGUGgCUAGC-------GCUCG-----UCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 23066 | 0.67 | 0.5221 |
Target: 5'- gAUCGUCGCCGGcgaCGCGAcgAGGUGGa -3' miRNA: 3'- gUGGCAGUGGCUa--GCGCUcgUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 30332 | 0.67 | 0.501744 |
Target: 5'- aACCGUUgACCG-UCgGCGAGguGGCcGAc -3' miRNA: 3'- gUGGCAG-UGGCuAG-CGCUCguCCG-CU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 16919 | 0.67 | 0.532398 |
Target: 5'- gAUCGUgGCCGggUGCGguucggcaucGGCGGGCGu -3' miRNA: 3'- gUGGCAgUGGCuaGCGC----------UCGUCCGCu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 53226 | 0.67 | 0.501744 |
Target: 5'- gCACCGUCGugUC-AUCuaCGAGCGGGCGGu -3' miRNA: 3'- -GUGGCAGU--GGcUAGc-GCUCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 7391 | 0.67 | 0.542768 |
Target: 5'- gACCG-CAUCGAcgaGCuGAGCAaGGCGAu -3' miRNA: 3'- gUGGCaGUGGCUag-CG-CUCGU-CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 51175 | 0.67 | 0.521074 |
Target: 5'- uCGCCGagcacgCGCCGAUCGuCGAggucggcgcuggcGCGGGCu- -3' miRNA: 3'- -GUGGCa-----GUGGCUAGC-GCU-------------CGUCCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 23420 | 0.67 | 0.5221 |
Target: 5'- aGCCca-GCUGAUCGCuGAcacGCAGGCGGc -3' miRNA: 3'- gUGGcagUGGCUAGCG-CU---CGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 48159 | 0.67 | 0.532398 |
Target: 5'- aCAUCGUgauccggaCGCCGAcCGCGAcucacCAGGCGAc -3' miRNA: 3'- -GUGGCA--------GUGGCUaGCGCUc----GUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 35950 | 0.67 | 0.501744 |
Target: 5'- aGCCGcCACCacgcagccGUCGCGAGCGcccccgaagacGGCGGu -3' miRNA: 3'- gUGGCaGUGGc-------UAGCGCUCGU-----------CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 41907 | 0.66 | 0.584838 |
Target: 5'- gACCGcggCGCgCGAUCGCcuGCuguGGCGAu -3' miRNA: 3'- gUGGCa--GUG-GCUAGCGcuCGu--CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 34722 | 0.66 | 0.563699 |
Target: 5'- gGgCGUCGCCGGuUCGCGAugaGCucGCGGa -3' miRNA: 3'- gUgGCAGUGGCU-AGCGCU---CGucCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 39286 | 0.66 | 0.573189 |
Target: 5'- --gCGUCGCggacuCGAUCGuCGAGCaccgagaGGGCGAg -3' miRNA: 3'- gugGCAGUG-----GCUAGC-GCUCG-------UCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 27700 | 0.66 | 0.581656 |
Target: 5'- aCAgCGUCACgCGA-CGCuguucccgggugagGAGcCAGGCGAg -3' miRNA: 3'- -GUgGCAGUG-GCUaGCG--------------CUC-GUCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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