Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16458 | 5' | -58.2 | NC_004084.1 | + | 42722 | 1.08 | 0.000708 |
Target: 5'- uCACCGUCACCGAUCGCGAGCAGGCGAa -3' miRNA: 3'- -GUGGCAGUGGCUAGCGCUCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 16121 | 0.81 | 0.062182 |
Target: 5'- gAUCGUCGCCGAUCGUGAaCGGGUGAc -3' miRNA: 3'- gUGGCAGUGGCUAGCGCUcGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 42004 | 0.79 | 0.091948 |
Target: 5'- aCGCCGUCuuugcucgagugGCCG-UCGCGAGCgAGGCGGu -3' miRNA: 3'- -GUGGCAG------------UGGCuAGCGCUCG-UCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 55986 | 0.79 | 0.097177 |
Target: 5'- gGCUGaUCGCCGAUgGCGAGCAucgcuGGCGAg -3' miRNA: 3'- gUGGC-AGUGGCUAgCGCUCGU-----CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 10667 | 0.77 | 0.134903 |
Target: 5'- uGCCGUUugCGAUCGcCGGGCAG-CGAc -3' miRNA: 3'- gUGGCAGugGCUAGC-GCUCGUCcGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 19376 | 0.76 | 0.15847 |
Target: 5'- --aCGUC-CCGAUCGCaucgaccuGGGCAGGCGAu -3' miRNA: 3'- gugGCAGuGGCUAGCG--------CUCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 396 | 0.74 | 0.211453 |
Target: 5'- uCACC-UCACCGAgaGCGAGCAGGaGAu -3' miRNA: 3'- -GUGGcAGUGGCUagCGCUCGUCCgCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 12023 | 0.73 | 0.226605 |
Target: 5'- uCGCCGUCGCCGAUCGUcgauucgaccugaaGGGCGucGGUGu -3' miRNA: 3'- -GUGGCAGUGGCUAGCG--------------CUCGU--CCGCu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 50523 | 0.73 | 0.228345 |
Target: 5'- --aCGUCGagagccCCGAUCGCGAGCagcuucgccGGGCGAu -3' miRNA: 3'- gugGCAGU------GGCUAGCGCUCG---------UCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 7180 | 0.73 | 0.228345 |
Target: 5'- aGCCGccuaucagUACCGAgagugggaUCGCGAGCAGcGCGAg -3' miRNA: 3'- gUGGCa-------GUGGCU--------AGCGCUCGUC-CGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 5341 | 0.71 | 0.307501 |
Target: 5'- --aCGUCGCCGA--GCGGGC-GGCGAg -3' miRNA: 3'- gugGCAGUGGCUagCGCUCGuCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 3561 | 0.71 | 0.314968 |
Target: 5'- gGCagGUCGguCCGAUggaaaGCGAGCGGGCGAc -3' miRNA: 3'- gUGg-CAGU--GGCUAg----CGCUCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 43 | 0.71 | 0.33031 |
Target: 5'- cCGCCGUCgGCCGAUUucUGAGCcgGGGCGGg -3' miRNA: 3'- -GUGGCAG-UGGCUAGc-GCUCG--UCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 47569 | 0.69 | 0.388258 |
Target: 5'- aCGCCGuUCGaggaCGuUCGCGAGCGcgguGGCGAc -3' miRNA: 3'- -GUGGC-AGUg---GCuAGCGCUCGU----CCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 21528 | 0.69 | 0.429805 |
Target: 5'- cCGCCGaguUCGCCGAgcuugaggaggccCGUGAGCAGGUc- -3' miRNA: 3'- -GUGGC---AGUGGCUa------------GCGCUCGUCCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 4520 | 0.68 | 0.442959 |
Target: 5'- uCGCC-UCGCag--CGCGuGCAGGCGAu -3' miRNA: 3'- -GUGGcAGUGgcuaGCGCuCGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 38370 | 0.68 | 0.462137 |
Target: 5'- aCGCCGg-AUCGAgCGCGGGaAGGCGAc -3' miRNA: 3'- -GUGGCagUGGCUaGCGCUCgUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 21874 | 0.68 | 0.462137 |
Target: 5'- aCugCGUCAuCCGcAUCGCGAGgaacuucaaCAGGCc- -3' miRNA: 3'- -GugGCAGU-GGC-UAGCGCUC---------GUCCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 48871 | 0.68 | 0.462137 |
Target: 5'- --aCGUC-CCGGggcUCGCGAcgaugcacgacgGCAGGCGAu -3' miRNA: 3'- gugGCAGuGGCU---AGCGCU------------CGUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 41676 | 0.68 | 0.471889 |
Target: 5'- --aCGUCAUCGAggcCGCGAuGCAgaccGGCGAg -3' miRNA: 3'- gugGCAGUGGCUa--GCGCU-CGU----CCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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