miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 5' -58.2 NC_004084.1 + 43 0.71 0.33031
Target:  5'- cCGCCGUCgGCCGAUUucUGAGCcgGGGCGGg -3'
miRNA:   3'- -GUGGCAG-UGGCUAGc-GCUCG--UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 396 0.74 0.211453
Target:  5'- uCACC-UCACCGAgaGCGAGCAGGaGAu -3'
miRNA:   3'- -GUGGcAGUGGCUagCGCUCGUCCgCU- -5'
16458 5' -58.2 NC_004084.1 + 3561 0.71 0.314968
Target:  5'- gGCagGUCGguCCGAUggaaaGCGAGCGGGCGAc -3'
miRNA:   3'- gUGg-CAGU--GGCUAg----CGCUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 4520 0.68 0.442959
Target:  5'- uCGCC-UCGCag--CGCGuGCAGGCGAu -3'
miRNA:   3'- -GUGGcAGUGgcuaGCGCuCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 5341 0.71 0.307501
Target:  5'- --aCGUCGCCGA--GCGGGC-GGCGAg -3'
miRNA:   3'- gugGCAGUGGCUagCGCUCGuCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 7180 0.73 0.228345
Target:  5'- aGCCGccuaucagUACCGAgagugggaUCGCGAGCAGcGCGAg -3'
miRNA:   3'- gUGGCa-------GUGGCU--------AGCGCUCGUC-CGCU- -5'
16458 5' -58.2 NC_004084.1 + 7391 0.67 0.542768
Target:  5'- gACCG-CAUCGAcgaGCuGAGCAaGGCGAu -3'
miRNA:   3'- gUGGCaGUGGCUag-CG-CUCGU-CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 9095 0.68 0.471889
Target:  5'- uCGCCGaUAUCGAgaguaGCGAGCAGGUc- -3'
miRNA:   3'- -GUGGCaGUGGCUag---CGCUCGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 10667 0.77 0.134903
Target:  5'- uGCCGUUugCGAUCGcCGGGCAG-CGAc -3'
miRNA:   3'- gUGGCAGugGCUAGC-GCUCGUCcGCU- -5'
16458 5' -58.2 NC_004084.1 + 11397 0.68 0.471889
Target:  5'- gCAUCGUCAUCGAUCGCGAcGUccuCGAg -3'
miRNA:   3'- -GUGGCAGUGGCUAGCGCU-CGuccGCU- -5'
16458 5' -58.2 NC_004084.1 + 12023 0.73 0.226605
Target:  5'- uCGCCGUCGCCGAUCGUcgauucgaccugaaGGGCGucGGUGu -3'
miRNA:   3'- -GUGGCAGUGGCUAGCG--------------CUCGU--CCGCu -5'
16458 5' -58.2 NC_004084.1 + 13607 0.66 0.595467
Target:  5'- aUACCGUCACCGA-C-CGGGUGGuCGGg -3'
miRNA:   3'- -GUGGCAGUGGCUaGcGCUCGUCcGCU- -5'
16458 5' -58.2 NC_004084.1 + 16121 0.81 0.062182
Target:  5'- gAUCGUCGCCGAUCGUGAaCGGGUGAc -3'
miRNA:   3'- gUGGCAGUGGCUAGCGCUcGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 16919 0.67 0.532398
Target:  5'- gAUCGUgGCCGggUGCGguucggcaucGGCGGGCGu -3'
miRNA:   3'- gUGGCAgUGGCuaGCGC----------UCGUCCGCu -5'
16458 5' -58.2 NC_004084.1 + 19376 0.76 0.15847
Target:  5'- --aCGUC-CCGAUCGCaucgaccuGGGCAGGCGAu -3'
miRNA:   3'- gugGCAGuGGCUAGCG--------CUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 21528 0.69 0.429805
Target:  5'- cCGCCGaguUCGCCGAgcuugaggaggccCGUGAGCAGGUc- -3'
miRNA:   3'- -GUGGC---AGUGGCUa------------GCGCUCGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 21581 0.66 0.606125
Target:  5'- -uUCGUCACCGAUgcaaccgGCGAGCAGcUGGa -3'
miRNA:   3'- guGGCAGUGGCUAg------CGCUCGUCcGCU- -5'
16458 5' -58.2 NC_004084.1 + 21874 0.68 0.462137
Target:  5'- aCugCGUCAuCCGcAUCGCGAGgaacuucaaCAGGCc- -3'
miRNA:   3'- -GugGCAGU-GGC-UAGCGCUC---------GUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 22815 0.67 0.500735
Target:  5'- gGgCGUCACgGAUCGauccguuCGAGCcgccgAGGCGAa -3'
miRNA:   3'- gUgGCAGUGgCUAGC-------GCUCG-----UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 23066 0.67 0.5221
Target:  5'- gAUCGUCGCCGGcgaCGCGAcgAGGUGGa -3'
miRNA:   3'- gUGGCAGUGGCUa--GCGCUcgUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.