miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 5' -58.2 NC_004084.1 + 23420 0.67 0.5221
Target:  5'- aGCCca-GCUGAUCGCuGAcacGCAGGCGGc -3'
miRNA:   3'- gUGGcagUGGCUAGCG-CU---CGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 27700 0.66 0.581656
Target:  5'- aCAgCGUCACgCGA-CGCuguucccgggugagGAGcCAGGCGAg -3'
miRNA:   3'- -GUgGCAGUG-GCUaGCG--------------CUC-GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 28644 0.68 0.491696
Target:  5'- aCGCCGaC-CCG-UCGCGAuGCAGGaCGGu -3'
miRNA:   3'- -GUGGCaGuGGCuAGCGCU-CGUCC-GCU- -5'
16458 5' -58.2 NC_004084.1 + 29565 0.66 0.563699
Target:  5'- gGCCGUUgaggGCC-AUCGcCGGGUGGGCGu -3'
miRNA:   3'- gUGGCAG----UGGcUAGC-GCUCGUCCGCu -5'
16458 5' -58.2 NC_004084.1 + 29770 0.66 0.606125
Target:  5'- gACCGUC-CUGcAUCGCGA-CGGGuCGGc -3'
miRNA:   3'- gUGGCAGuGGC-UAGCGCUcGUCC-GCU- -5'
16458 5' -58.2 NC_004084.1 + 30332 0.67 0.501744
Target:  5'- aACCGUUgACCG-UCgGCGAGguGGCcGAc -3'
miRNA:   3'- gUGGCAG-UGGCuAG-CGCUCguCCG-CU- -5'
16458 5' -58.2 NC_004084.1 + 31282 0.66 0.606125
Target:  5'- --aCGUgGCCGGUCGCGGGUcccuaucguugGGGUa- -3'
miRNA:   3'- gugGCAgUGGCUAGCGCUCG-----------UCCGcu -5'
16458 5' -58.2 NC_004084.1 + 34722 0.66 0.563699
Target:  5'- gGgCGUCGCCGGuUCGCGAugaGCucGCGGa -3'
miRNA:   3'- gUgGCAGUGGCU-AGCGCU---CGucCGCU- -5'
16458 5' -58.2 NC_004084.1 + 35710 0.66 0.584838
Target:  5'- aGCCG-CACuCGAgguucucagggCGCGAGguGGCa- -3'
miRNA:   3'- gUGGCaGUG-GCUa----------GCGCUCguCCGcu -5'
16458 5' -58.2 NC_004084.1 + 35950 0.67 0.501744
Target:  5'- aGCCGcCACCacgcagccGUCGCGAGCGcccccgaagacGGCGGu -3'
miRNA:   3'- gUGGCaGUGGc-------UAGCGCUCGU-----------CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 38370 0.68 0.462137
Target:  5'- aCGCCGg-AUCGAgCGCGGGaAGGCGAc -3'
miRNA:   3'- -GUGGCagUGGCUaGCGCUCgUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 39286 0.66 0.573189
Target:  5'- --gCGUCGCggacuCGAUCGuCGAGCaccgagaGGGCGAg -3'
miRNA:   3'- gugGCAGUG-----GCUAGC-GCUCG-------UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 41676 0.68 0.471889
Target:  5'- --aCGUCAUCGAggcCGCGAuGCAgaccGGCGAg -3'
miRNA:   3'- gugGCAGUGGCUa--GCGCU-CGU----CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 41907 0.66 0.584838
Target:  5'- gACCGcggCGCgCGAUCGCcuGCuguGGCGAu -3'
miRNA:   3'- gUGGCa--GUG-GCUAGCGcuCGu--CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 42004 0.79 0.091948
Target:  5'- aCGCCGUCuuugcucgagugGCCG-UCGCGAGCgAGGCGGu -3'
miRNA:   3'- -GUGGCAG------------UGGCuAGCGCUCG-UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 42722 1.08 0.000708
Target:  5'- uCACCGUCACCGAUCGCGAGCAGGCGAa -3'
miRNA:   3'- -GUGGCAGUGGCUAGCGCUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 46560 0.68 0.480753
Target:  5'- gAUCGUCGUCGGUCGUGAacucgauaucgccGuCAGGCGAu -3'
miRNA:   3'- gUGGCAGUGGCUAGCGCU-------------C-GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 47569 0.69 0.388258
Target:  5'- aCGCCGuUCGaggaCGuUCGCGAGCGcgguGGCGAc -3'
miRNA:   3'- -GUGGC-AGUg---GCuAGCGCUCGU----CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 47960 0.66 0.606125
Target:  5'- gGCCGUCcUgGAUCGCcucGCGGGCu- -3'
miRNA:   3'- gUGGCAGuGgCUAGCGcu-CGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 48159 0.67 0.532398
Target:  5'- aCAUCGUgauccggaCGCCGAcCGCGAcucacCAGGCGAc -3'
miRNA:   3'- -GUGGCA--------GUGGCUaGCGCUc----GUCCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.