miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16458 5' -58.2 NC_004084.1 + 56609 0.67 0.532398
Target:  5'- -gUCGUCGCCGGUCGgCGAGUucGCc- -3'
miRNA:   3'- guGGCAGUGGCUAGC-GCUCGucCGcu -5'
16458 5' -58.2 NC_004084.1 + 55986 0.79 0.097177
Target:  5'- gGCUGaUCGCCGAUgGCGAGCAucgcuGGCGAg -3'
miRNA:   3'- gUGGC-AGUGGCUAgCGCUCGU-----CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 53226 0.67 0.501744
Target:  5'- gCACCGUCGugUC-AUCuaCGAGCGGGCGGu -3'
miRNA:   3'- -GUGGCAGU--GGcUAGc-GCUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 51175 0.67 0.521074
Target:  5'- uCGCCGagcacgCGCCGAUCGuCGAggucggcgcuggcGCGGGCu- -3'
miRNA:   3'- -GUGGCa-----GUGGCUAGC-GCU-------------CGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 50523 0.73 0.228345
Target:  5'- --aCGUCGagagccCCGAUCGCGAGCagcuucgccGGGCGAu -3'
miRNA:   3'- gugGCAGU------GGCUAGCGCUCG---------UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 49845 0.68 0.471889
Target:  5'- uCACuCGUCGaCG-UCGCGAGCGagauccGGCGAg -3'
miRNA:   3'- -GUG-GCAGUgGCuAGCGCUCGU------CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 48871 0.68 0.462137
Target:  5'- --aCGUC-CCGGggcUCGCGAcgaugcacgacgGCAGGCGAu -3'
miRNA:   3'- gugGCAGuGGCU---AGCGCU------------CGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 48159 0.67 0.532398
Target:  5'- aCAUCGUgauccggaCGCCGAcCGCGAcucacCAGGCGAc -3'
miRNA:   3'- -GUGGCA--------GUGGCUaGCGCUc----GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 47960 0.66 0.606125
Target:  5'- gGCCGUCcUgGAUCGCcucGCGGGCu- -3'
miRNA:   3'- gUGGCAGuGgCUAGCGcu-CGUCCGcu -5'
16458 5' -58.2 NC_004084.1 + 47569 0.69 0.388258
Target:  5'- aCGCCGuUCGaggaCGuUCGCGAGCGcgguGGCGAc -3'
miRNA:   3'- -GUGGC-AGUg---GCuAGCGCUCGU----CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 46560 0.68 0.480753
Target:  5'- gAUCGUCGUCGGUCGUGAacucgauaucgccGuCAGGCGAu -3'
miRNA:   3'- gUGGCAGUGGCUAGCGCU-------------C-GUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 42722 1.08 0.000708
Target:  5'- uCACCGUCACCGAUCGCGAGCAGGCGAa -3'
miRNA:   3'- -GUGGCAGUGGCUAGCGCUCGUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 42004 0.79 0.091948
Target:  5'- aCGCCGUCuuugcucgagugGCCG-UCGCGAGCgAGGCGGu -3'
miRNA:   3'- -GUGGCAG------------UGGCuAGCGCUCG-UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 41907 0.66 0.584838
Target:  5'- gACCGcggCGCgCGAUCGCcuGCuguGGCGAu -3'
miRNA:   3'- gUGGCa--GUG-GCUAGCGcuCGu--CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 41676 0.68 0.471889
Target:  5'- --aCGUCAUCGAggcCGCGAuGCAgaccGGCGAg -3'
miRNA:   3'- gugGCAGUGGCUa--GCGCU-CGU----CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 39286 0.66 0.573189
Target:  5'- --gCGUCGCggacuCGAUCGuCGAGCaccgagaGGGCGAg -3'
miRNA:   3'- gugGCAGUG-----GCUAGC-GCUCG-------UCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 38370 0.68 0.462137
Target:  5'- aCGCCGg-AUCGAgCGCGGGaAGGCGAc -3'
miRNA:   3'- -GUGGCagUGGCUaGCGCUCgUCCGCU- -5'
16458 5' -58.2 NC_004084.1 + 35950 0.67 0.501744
Target:  5'- aGCCGcCACCacgcagccGUCGCGAGCGcccccgaagacGGCGGu -3'
miRNA:   3'- gUGGCaGUGGc-------UAGCGCUCGU-----------CCGCU- -5'
16458 5' -58.2 NC_004084.1 + 35710 0.66 0.584838
Target:  5'- aGCCG-CACuCGAgguucucagggCGCGAGguGGCa- -3'
miRNA:   3'- gUGGCaGUG-GCUa----------GCGCUCguCCGcu -5'
16458 5' -58.2 NC_004084.1 + 34722 0.66 0.563699
Target:  5'- gGgCGUCGCCGGuUCGCGAugaGCucGCGGa -3'
miRNA:   3'- gUgGCAGUGGCU-AGCGCU---CGucCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.