Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16458 | 5' | -58.2 | NC_004084.1 | + | 23066 | 0.67 | 0.5221 |
Target: 5'- gAUCGUCGCCGGcgaCGCGAcgAGGUGGa -3' miRNA: 3'- gUGGCAGUGGCUa--GCGCUcgUCCGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 56609 | 0.67 | 0.532398 |
Target: 5'- -gUCGUCGCCGGUCGgCGAGUucGCc- -3' miRNA: 3'- guGGCAGUGGCUAGC-GCUCGucCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 16919 | 0.67 | 0.532398 |
Target: 5'- gAUCGUgGCCGggUGCGguucggcaucGGCGGGCGu -3' miRNA: 3'- gUGGCAgUGGCuaGCGC----------UCGUCCGCu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 13607 | 0.66 | 0.595467 |
Target: 5'- aUACCGUCACCGA-C-CGGGUGGuCGGg -3' miRNA: 3'- -GUGGCAGUGGCUaGcGCUCGUCcGCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 29770 | 0.66 | 0.606125 |
Target: 5'- gACCGUC-CUGcAUCGCGA-CGGGuCGGc -3' miRNA: 3'- gUGGCAGuGGC-UAGCGCUcGUCC-GCU- -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 47960 | 0.66 | 0.606125 |
Target: 5'- gGCCGUCcUgGAUCGCcucGCGGGCu- -3' miRNA: 3'- gUGGCAGuGgCUAGCGcu-CGUCCGcu -5' |
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16458 | 5' | -58.2 | NC_004084.1 | + | 16121 | 0.81 | 0.062182 |
Target: 5'- gAUCGUCGCCGAUCGUGAaCGGGUGAc -3' miRNA: 3'- gUGGCAGUGGCUAGCGCUcGUCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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